SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41893

Length: 254 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene41893
TGGACCGAGACATAAGATTGCGGAGCCGTGGTTTCCTTTTCTGTTCTCATGGTTCTTCTGGTGCTGCGCAGCTTATTATTATTTCGTCGATCATTTTATCATTCCAACTGCCATTTACATTAATTCCACTGTTGAAGTTTACGAGCAGTGAGATAAAGATGGGTCCTCACAAGAATTCAATCGGAATTATGGTTCTTTCCTGGTCATTGGGATGGTGTATCATGGGCATCAACACCTACTACCTGACTACAGAA

Ace file of the UniGene sp_v1.1_unigene41893

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	metal transporter, putative	-	-	3.0e-13	72%
FL-Next	sp=Metal transporter Nramp5; Oryza sativa subsp. japonica (Rice).	-	-	0.0	70%
Blast2go	nramp transporter	-	-	5.12868e-13	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Natural resistance-associated macrophage protein	IPR001046	-	5.12868e-13	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8H4H5

Fln msg: Distance to subject end: 87 aas, your sequence is shorter than subject: 84 - 538

Fln protein: DRDIRLRSRGFLFCSHGSSGAAQLIIISSIILSFQLPFTLIPLLKFTSSEIKMGPHKNSIGIMVLSWSLGWCIMGINTYYLTTE

Protein Length: 85

Fln nts: TGGACCGAGACATAAGATTGCGGAGCCGTGGTTTCCTTTTCTGTTCTCATGGTTCTTCTGGTGCTGCGCAGCTTATTATTATTTCGTCGATCATTTTATCATTCCAACTGCCATTTACATTAATTCCACTGTTGAAGTTTACGAGCAGTGAGATAAAGATGGGTCCTCACAAGAATTCAATCGGAATTATGGTTCTTTCCTGGTCATTGGGATGGTGTATCATGGGCATCAACACCTACTACCTGACTACAGAA

Fln Alignment:

sp_v1.1_unigene41893___FQLPFTLIPLLKFTSSEIKMGPHKNSIGIMVLSWSLGWCIMGINTYYLTT
Q8H4H5_______________FELPFALIPLLKFSSSKSKMGPHKNSIYIIVFSWFLGLLIIGINMYFLST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain