SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41859

Length: 311 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene41859
ATGGGGGGTCAATCCACTGCAAGCAATACCAAAAGCAGAAGCCATCAAAGTGGCCAAAGCTTGAGACAAAATGGCATACAAAGTTGTTCGTTCTGTGGGTGCTGGTTGCAGCAATAGTCTCTATGTGGATTTTCTATTCCATGGATTATGACATTATAGAACGTCGCAAAGAAACATTGGCAAGCATGTGCGATGAGCGTGCAAGAATGCTGCAGGACCAGTTTTCCGTGAGCATGAATCATGTGCATGCTTTGGCTATTTTAGTTTCTACTTTCCATCACATGATTCATGCATCGGNTATTGATCAGGTT

Ace file of the UniGene sp_v1.1_unigene41859

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histidine kinase cytokinin receptor	-	-	2.0e-24	60%
FL-Next	sp=Histidine kinase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Blast2go	histidine kinase cytokinin receptor	-	-	3.31773e-25	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histidine kinase.	EC:2.7.13.3	-	3.31773e-25	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	3.31773e-25	72%
Blast2go	response to salt stress	GO:0009651	Biological Process	3.31773e-25	72%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	3.31773e-25	72%
Blast2go	regulation of shoot development	GO:0048831	Biological Process	3.31773e-25	72%
Blast2go	regulation of chlorophyll catabolic process	GO:0010271	Biological Process	3.31773e-25	72%
Blast2go	regulation of seed germination	GO:0010029	Biological Process	3.31773e-25	72%
Blast2go	leaf senescence	GO:0010150	Biological Process	3.31773e-25	72%
Blast2go	response to cold	GO:0009409	Biological Process	3.31773e-25	72%
Blast2go	protein histidine kinase activity	GO:0004673	Molecular Function	3.31773e-25	72%
Blast2go	osmosensor activity	GO:0005034	Molecular Function	3.31773e-25	72%
Blast2go	protein binding	GO:0005515	Molecular Function	3.31773e-25	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.31773e-25	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C5U1

Fln msg: Distance to subject end: 866 aas, your sequence is shorter than subject: 103 - 1036

Fln protein: GGSIHCKQYQKQKPSKWPKLETKWHTKLFVLWVLVAAIVSMWIFYSMDYDIIERRKETLASMCDERARMLQDQFSVSMNHVHALAILVSTFHHMIHASDIDQV

Protein Length: 104

Fln nts: ATGGGGGGTCAATCCACTGCAAGCAATACCAAAAGCAGAAGCCATCAAAGTGGCCAAAGCTTGAGACAAAATGGCATACAAAGTTGTTCGTTCTGTGGGTGCTGGTTGCAGCAATAGTCTCTATGTGGATTTTCTATTCCATGGATTATGACATTATAGAACGTCGCAAAGAAACATTGGCAAGCATGTGCGATGAGCGTGCAAGAATGCTGCAGGACCAGTTTTCCGTGAGCATGAATCATGTGCATGCTTTGGCTATTTTAGTTTCTACTTTCCATCACATGATTCATGCATCGGaTATTGATCAGGTT

Fln Alignment:

sp_v1.1_unigene41859___KLETKWHTKLFVLWVLVAAIVSMWIFYSMDYDIIERRKETLASMCDERARMLQDQFSVSMNHVHALAILVSTFHHMIHASDIDQ
Q9C5U1_______________KFNKAWWRKLVVVWVVFWVLVSIWTFWYFSSQAMEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSAIDQ

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
141	33	66			0.997452
142		66		33	0.997452
143	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain