SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41810

Length: 521 nt

UniGene Fasta

>sp_v1.1_unigene41810
CGTCGTGACCTTGGCTGTCACTCAATTGAGGTACTACTCAAATGTTGGATGGGATTCAAGGTCCTTATTACTGTGGAACAGGGTGTGTCCATCGAAGAGCTGCTCTGTGGGGTTATAAACCAGGATTAGTAGAGAGGTTCGAAGGTAATAGTTCAGAACTAGGTTTTTCTCCTTTACCTCAAAAATCTGCCCTGTCAGCGTTAGGAAGACAAATTCGGCTCAACAGTTCTACAGTTAAAGCAGCTCTAGATTTATGCACCAGCCACTCTGAAGACAAAATGTCCTGGGGAAAGGAGATTGGATGGAGGTATGGAACGAGCACAGAAGATCTGTTGACAGGATTAGAGATGCACTGTCTGGGTTGGAGATCTATTTACTTCTGGCCTACTCGACCTGCATTTAAAGGGGTGGCACCTGCTATTGCTTTGGATCGTTTAGCACAAAGGAGCGGATATCTTGTGGATTGGTTGGCGTTTTATGTGTTGTTGCTTGCTTCTTTTTTATTGTTTGCCAAGGCTCAT

Ace file of the UniGene sp_v1.1_unigene41810

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cesA5; cellulose synthase 5, glycosyltransferase family 2; K10999 cellulose synthase A [EC:2.4.1.12]	-	-	2.0e-18	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	cellulose synthase catalytic subunit	-	-	3.47945e-23	56%

Source	ECs	Term	Type	e value	Identity
AutoFact	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	2.0e-18	61%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Starch and sucrose metabolism	00500		2.0e-18	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	3.47945e-23	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cellulose synthase	IPR005150	-	3.47945e-23	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP88

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 220 aas, your sequence is shorter than subject: 173 - 785

Fln protein: S*PWLSLN*GTTQMLDGIQGPYYCGTGCVHRRAALWGYKPGLVERFEGNSSELGFSPLPQKSALSALGRQIRLNSSTVKAALDLCTSHSEDKMSWGKEIGWRYGTSTEDLLTGLEMHCLGWRSIYFWPTRPAFKGVAPAIALDRLAQRSGYLVDWLAFYVLLLASFLLFAKAH

Protein Length: 174

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGAGGTACTACTCAAATGTTGGATGGGATTCAAGGTCCTTATTACTGTGGAACAGGGTGTGTCCATCGAAGAGCTGCTCTGTGGGGTTATAAACCAGGATTAGTAGAGAGGTTCGAAGGTAATAGTTCAGAACTAGGTTTTTCTCCTTTACCTCAAAAATCTGCCCTGTCAGCGTTAGGAAGACAAATTCGGCTCAACAGTTCTACAGTTAAAGCAGCTCTAGATTTATGCACCAGCCACTCTGAAGACAAAATGTCCTGGGGAAAGGAGATTGGATGGAGGTATGGAACGAGCACAGAAGATCTGTTGACAGGATTAGAGATGCACTGTCTGGGTTGGAGATCTATTTACTTCTGGCCTACTCGACCTGCATTTAAAGGGGTGGCACCTGCTATTGCTTTGGATCGTTTAGCACAAAGGAGCGGATATCTTGTGGATTGGTTGGCGTTTTATGTGTTGTTGCTTGCTTCTTTTTTATTGTTTGCCAAGGCTCAT

Fln Alignment:

sp_v1.1_unigene41810___LDGIQGPYYCGTGCVHRRAALWGYKPG-----------------LVERFEGNSSELGF--SPLPQKSALSALGRQIRLN---------SSTVKAALDLCTSHSEDKMSWGKEIGWRYGTSTEDLLTGLEMHCLGWRSIYFWPTRPAFKGVAPAIALDRLAQ
B8LP88_______________MNGLQGPVYCGTGCFHRRKALYGAPPAADQYNNKDVREFHNHAKVYHSLKASSWSLGALSSIFGSSSALAASAQTTMRNTQFGVLSSPSSTIDEALNVASCRYETNTAWGKEVGWMYGSTVEDVMTGFKVHCLGWHSVFCVPEQPAFMGTAPANGPDCLVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain