SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41733

Length: 350 nt

UniGene Fasta

>sp_v1.1_unigene41733
ATTGGGGGTAGAGGATCTGACCTTTGTTGCATCAGTCCTGTCCATCGGCATCCAGGGGTTTGCAAGGGTTGGATAAATGAATTACCTGGTGTCCTAAAACAAGCAAGATCAGGAGGAAGGGTGAAGAAGAAAGAAAGCGCTCACCATTCCAATTACCATGCCTCTAGCAATACCCAGAAACATCTGTGATGTGCGGATCTTACTCCTCATTGCAGCAGTCCTGTTCATCACCATCCAGATGCGGCTTTTTGCAACGCAGTCTGAGTATGCAGATCGTCTTGCAGCTGCGGTGGAAGCTGAAAATCATTGCACGAGTCAAATGCGACTACTGATTGATCAAATAAGCATTC

Ace file of the UniGene sp_v1.1_unigene41733

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha-1,3-mannosyl-glycoprotein beta-1, 2-n-acetylglucosaminyltransferase, putative (EC:2.4.1.101); K00726 alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.101]	-	-	4.0e-16	79%
FL-Next	sp=Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Blast2go	n-acetylglucosaminyltransferase i	-	-	1.991e-17	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase.	EC:2.4.1.101	-	1.991e-17	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	N-Glycan biosynthesis	00510		1.991e-17	87%
Blast2go	Various types of N-glycan biosynthesis	00513		1.991e-17	87%
Blast2go	Metabolic pathways	01100		1.991e-17	87%
Blast2go	Protein N-acetylglucosaminyltransferase.	EC:2.4.1.94	-	1.991e-17	87%

Source	ECs	Term	Type	e value	Identity
AutoFact	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase.	EC:2.4.1.101	-	4.0e-16	79%

Source	KEGGs	Term	e value	Identity
AutoFact	N-Glycan biosynthesis	00510	4.0e-16	79%
AutoFact	Various types of N-glycan biosynthesis	00513	4.0e-16	79%
AutoFact	Metabolic pathways	01100	4.0e-16	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	hyperosmotic response	GO:0006972	Biological Process	1.991e-17	87%
Blast2go	N-glycan processing	GO:0006491	Biological Process	1.991e-17	87%
Blast2go	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	GO:0003827	Molecular Function	1.991e-17	87%
Blast2go	protein N-acetylglucosaminyltransferase activity	GO:0016262	Molecular Function	1.991e-17	87%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	1.991e-17	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 13	IPR004139	-	1.991e-17	87%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9XGM8

Fln msg: Distance to subject end: 384 aas, your sequence is shorter than subject: 64 - 444

Fln protein: MPLAIPRNICDVRILLLIAAVLFITIQMRLFATQSEYADRLAAAVEAENHCTSQMRLLIDQISI

Protein Length: 65

Fln nts: ATTGGGGGTAGAGGATCTGACCTTTGTTGCATCAGTCCTGTCCATCGGCATCCAGGGGTTTGCAAGGGTTGGATAAATGAATTACCTGGTGTCCTAAAACAAGCAAGATCAGGAGGAAGGGTGAAGAAGAAAGAAAGCGCTCACCATTCCAATTACC_-_ATGCCTCTAGCAATACCCAGAAACATCTGTGATGTGCGGATCTTACTCCTCATTGCAGCAGTCCTGTTCATCACCATCCAGATGCGGCTTTTTGCAACGCAGTCTGAGTATGCAGATCGTCTTGCAGCTGCGGTGGAAGCTGAAAATCATTGCACGAGTCAAATGCGACTACTGATTGATCAAATAAGCATTC

Fln Alignment:

sp_v1.1_unigene41733___CDVRILLLIAAVLFITIQMRLFATQSEYADRLAAAVEAENHCTSQMRLLIDQISI
Q9XGM8_______________CDLRFLLIPAAFMFIYIQMRLFQTQSQYADRLSSAIESENHCTSQMRGLIDEVSI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
317		66		33	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain