SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41715

Length: 520 nt

UniGene Fasta

>sp_v1.1_unigene41715
CTCAGTGCGGTACGAGAGATCAACAAACTTCTAGAAAATGCTCGTTCTGTTGCTTCCAGGGATAATGGTAAATCTGTTTGTACAACTATAGAGTGGCTGGAGAGAAATAACATTGTCCATCACACGTTGCGATCCCATCTACACCACAAGCAGTATGTAGACCAGGTCCAAAATATTATGAGGCTTCTATTGTTGGAACATCGACTATCAGAAGAGCATTTAGATGCCATTTGGGCTGCTACTGAAAAGCCAGACCAGTTTGAGGCGGTGAAAGCCAATGTCTTTGACCTCATTGCTGATTTGGCTTGGTCATTTTCAGACAAACAGTTGGATAGTCTCTTTGGCAGGTTGAAGCATGTTCAGGGTCGATCCACAGGTGACATTATTAAAATCCTTACCTTCTTGAAGAAACTTGCACAAAGTGACAACAAAGGAATTATGGCCGAAAGATTACTTGAGTTACTGTGGAACATGATGTATATGGGAGAAGCACCTGGTGAAGTACTAGAGTCTGGAGCAT

Ace file of the UniGene sp_v1.1_unigene41715

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Selaginella moellendorffii RepID=D8SWI5_SELML	-	-	70%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase; Selaginella moellendorffii (Spikemoss).	-	-	76%
Blast2go	ubiquitin specific peptidase x chromosome	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	60%
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8SW63

Fln msg: Distance to subject end: 1853 aas, your sequence is shorter than subject: 173 - 2414

Fln protein: LSAVREINKLLENARSVASRDNGKSVCTTIEWLERNNIVHHTLRSHLHHKQYVDQVQNIMRLLLLEHRLSEEHLDAIWAATEKPDQFEAVKANVFDLIADLAWSFSDKQLDSLFGRLKHVQGRSTGDIIKILTFLKKLAQSDNKGIMAERLLELLWNMMYMGEAPGEVLESGA

Protein Length: 174

Fln nts: CTCAGTGCGGTACGAGAGATCAACAAACTTCTAGAAAATGCTCGTTCTGTTGCTTCCAGGGATAATGGTAAATCTGTTTGTACAACTATAGAGTGGCTGGAGAGAAATAACATTGTCCATCACACGTTGCGATCCCATCTACACCACAAGCAGTATGTAGACCAGGTCCAAAATATTATGAGGCTTCTATTGTTGGAACATCGACTATCAGAAGAGCATTTAGATGCCATTTGGGCTGCTACTGAAAAGCCAGACCAGTTTGAGGCGGTGAAAGCCAATGTCTTTGACCTCATTGCTGATTTGGCTTGGTCATTTTCAGACAAACAGTTGGATAGTCTCTTTGGCAGGTTGAAGCATGTTCAGGGTCGATCCACAGGTGACATTATTAAAATCCTTACCTTCTTGAAGAAACTTGCACAAAGTGACAACAAAGGAATTATGGCCGAAAGATTACTTGAGTTACTGTGGAACATGATGTATATGGGAGAAGCACCTGGTGAAGTACTAGAGTCTGGAGCAT

Fln Alignment:

sp_v1.1_unigene41715___LSAVREINKLLENARSVASRDNGKSVCTTIEWLERNNIVHHTLRSHLHHKQYVDQVQNIMXXXXXXXXXXXXXXDAIWAATEKPDQFEAVKANVFDLIADLAWSFSDKQLDSLFGRLKHVQGRSTGDIIKILTFLKKLAQSDNKGIMAERLLELLWNMMYMGEAPGEVLESGA
D8SW63_______________LSAVREINKLLENARAIAPRDKSRSVNATIQWLERNNILRHVLRSHLHHKQYVDQVEKIMRFLLQERRLSEEHIDAIWAATEKPDQFETVKANIFDLLADLAWSFSAEQLDSLFGRFERSQGRSPSDIVKILSLVKKLARSDTKGVMAQRLLELLWNMMHSGEAPAEVLDSGA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain