SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41707

Length: 263 nt

UniGene Fasta

>sp_v1.1_unigene41707
GGGGTAATGATACAGACCGGTTCCGTAGCTGGACAGAGCAACAACCACTGAAGCTGACAAGACTGGGGGAGCCAGATCTGGTGACATCACAACGGGCCAGACCTACAAGAATTAAGAGTTCAGCTGAACTTGAAGAAGAAATGATTGCTAACATGCCAAGGTTCAAAGCAAGGCCTCTGAACAAGAAGATTCTAGAAGGTCCAACCTTAGCTGCTTTGCCCCGAAGCACACCTCAATTACCTGAATTCCAGGAATTCAATTTG

Ace file of the UniGene sp_v1.1_unigene41707

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPX2_importin domain containing protein	-	-	6.0e-26	58%
FL-Next	tr=Putative uncharacterized protein At1g03780; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%
Blast2go	protein	-	-	5.06363e-21	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	spindle assembly	GO:0051225	Biological Process	5.06363e-21	75%
Blast2go	microtubule binding	GO:0008017	Molecular Function	5.06363e-21	75%
Blast2go	nucleus	GO:0005634	Cellular Component	5.06363e-21	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cell cycle regulated microtubule associated protein	IPR022021	-	5.06363e-21	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q56XS5

Fln msg: Distance to subject end: 272 aas, your sequence is shorter than subject: 87 - 758

Fln protein: GNDTDRFRSWTEQQPLKLTRLGEPDLVTSQRARPTRIKSSAELEEEMIANMPRFKARPLNKKILEGPTLAALPRSTPQLPEFQEFNL

Protein Length: 88

Fln nts: GGGGTAATGATACAGACCGGTTCCGTAGCTGGACAGAGCAACAACCACTGAAGCTGACAAGACTGGGGGAGCCAGATCTGGTGACATCACAACGGGCCAGACCTACAAGAATTAAGAGTTCAGCTGAACTTGAAGAAGAAATGATTGCTAACATGCCAAGGTTCAAAGCAAGGCCTCTGAACAAGAAGATTCTAGAAGGTCCAACCTTAGCTGCTTTGCCCCGAAGCACACCTCAATTACCTGAATTCCAGGAATTCAATTTG

Fln Alignment:

sp_v1.1_unigene41707___LKLTRLGEPDLVTSQRARPTRIKSSAELEEEMIANMPRFKARPLNKKILEGPTLAALPRSTPQLPEFQEFNL
Q56XS5_______________LTLTRPKEPEFVTSQRARPLRVKSSAELEEEMLAKIPKFKARPVNKKILAAPALPAPQRSTPHLPEFQEFHL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain