SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41648

Length: 546 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene41648
GGACGAGAAACTGAAAGATTTTGAAGATAAAGTGGGATTGCAGCAACAGCACAGTGGGAGATCTCAGATGTTGGGGATCTGGGGTTTAGGTGGCATAGGAAAGACTACATGGGCTAAAGAATTTTACAATAGGAAAAAATCTGATTTTCAGAAATCGTGCTTTTTGCATGACGTCAAAGAAAATGGGGCTAAAGGCACATTAAATTTGATGCAGAGAGAACTTTTTCAAAGCTTGACCTCAAAAGATGAGCCAGTAAAGAGTGTTGATATAGGTACAGAGATGCTCAAAGAGCCTCTCAAATCTTGTAATGCCTTAGTTATATTAGATGATGTAGATGATGTGAATCAAGTAGATGCACTTTTGCCAGTTGAAATCCGCGATCTCCACCCGCATAGCTTAATATTGATTACATCCAGAGACAAGGGCATTCTGATAAGCTCAAAAGTTGAAAACTCATCCATTTATTGGTTGAGAGAACTTAACCCAGACCACTCACGAGTTCTCTTCTGCTCCTACGCCTTCAGCCAGCGCATCCAAGGCCAAGA

Ace file of the UniGene sp_v1.1_unigene41648 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative NBS-LRR protein G8504 (Fragment) n=2 Tax=Pinus monticola RepID=Q6WE80_PINMO	-	-	4.0e-38	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	nbs-coding resistance gene protein	-	-	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Disease resistance protein	IPR000767	-	0.0	66%
Blast2go	NB-ARC	IPR002182	-	0.0	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPT1

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 181 - 258

Fln protein: DEKLKDFEDKVGLQQQHSGRSQMLGIWGLGGIGKTTWAKEFYNRKKSDFQKSCFLHDVKENGAKGTLNLMQRELFQSLTSKDEPVKSVDIGTEMLKEPLKSCNALVILDDVDDVNQVDALLPVEIRDLHPHSLILITSRDKGILISSKVENSSIYWLRELNPDHSRVLFCSYAFSQRIQGQ

Protein Length: 182

Fln nts: GGACGAGAAACTGAAAGATTTTGAAGATAAAGTGGGATTGCAGCAACAGCACAGTGGGAGATCTCAGATGTTGGGGATCTGGGGTTTAGGTGGCATAGGAAAGACTACATGGGCTAAAGAATTTTACAATAGGAAAAAATCTGATTTTCAGAAATCGTGCTTTTTGCATGACGTCAAAGAAAATGGGGCTAAAGGCACATTAAATTTGATGCAGAGAGAACTTTTTCAAAGCTTGACCTCAAAAGATGAGCCAGTAAAGAGTGTTGATATAGGTACAGAGATGCTCAAAGAGCCTCTCAAATCTTGTAATGCCTTAGTTATATTAGATGATGTAGATGATGTGAATCAAGTAGATGCACTTTTGCCAGTTGAAATCCGCGATCTCCACCCGCATAGCTTAATATTGATTACATCCAGAGACAAGGGCATTCTGATAAGCTCAAAAGTTGAAAACTCATCCATTTATTGGTTGAGAGAACTTAACCCAGACCACTCACGAGTTCTCTTCTGCTCCTACGCCTTCAGCCAGCGCATCCAAGGCCAAGA

Fln Alignment:

sp_v1.1_unigene41648___DEKLKDFEDKVGLQQQHSGRSQMLGIWGLGGIGKTTWAKEFYNRKKSDFQKSCFLHDVKENGAKGTLNLMQRELFQSLTSKDEPVKSVDIGTEMLKEPLKSCNALVILDDVDDVNQVDALLPVEIRDLHPHSLILITSRDKGILISSKVENSSIYWLRELNPDHSRVLFCSYAFSQ
B8LPT1_______________DYKLKDFEDTVLLQQQQSGKPQLLGIVGLGGVGKTTMAKEFFNRKKTDYNTSCFLSDVRDHAATRSLNLLQSQLHKSLTGMDRNIDSVDQGKGMLMESLKSSKALIILDDVDHVDQVKALLPVQTHDLDSRSLILITSRDKGVLRGSKVDESSIYTLTGLNEQHSLELFCSHAFSQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain