SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41624

Length: 232 nt

UniGene Fasta

>sp_v1.1_unigene41624
TAGGGTTTGCATTGCAGAGGCAGGCGCCATACCTTTGCTTGTGTCGCTGCTGTCTTCACAGGATCCCAAAGCTCAAGAAAATGCTGTAACTACAATCCTAAATTTATCTATTTGTGAGGGAAACAAAGCTAAAATAATGGAATCTGGTGCATTACAGCCAATCACCAATGTTGTCAGATATGGATGCAGTATGGAAGCTAGGGAGAATGCGGCTGCAACGCTCTTCAGCCTT

Ace file of the UniGene sp_v1.1_unigene41624

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PUB14; PUB14; ubiquitin-protein ligase	-	-	2.0e-20	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	protein	-	-	7.04535e-23	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	7.04535e-23	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	7.04535e-23	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo	IPR000225	-	7.04535e-23	82%
Blast2go	Armadillo-like helical	IPR011989	-	7.04535e-23	82%
Blast2go	Armadillo-type fold	IPR016024	-	7.04535e-23	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: Distance to subject end: 172 aas, your sequence is shorter than subject: 77 - 497

Fln protein: RVCIAEAGAIPLLVSLLSSQDPKAQENAVTTILNLSICEGNKAKIMESGALQPITNVVRYGCSMEARENAAATLFSL

Protein Length: 78

Fln nts: TAGGGTTTGCATTGCAGAGGCAGGCGCCATACCTTTGCTTGTGTCGCTGCTGTCTTCACAGGATCCCAAAGCTCAAGAAAATGCTGTAACTACAATCCTAAATTTATCTATTTGTGAGGGAAACAAAGCTAAAATAATGGAATCTGGTGCATTACAGCCAATCACCAATGTTGTCAGATATGGATGCAGTATGGAAGCTAGGGAGAATGCGGCTGCAACGCTCTTCAGCCTT

Fln Alignment:

sp_v1.1_unigene41624___RVCIAEAGAIPLLVSLLSSQDPKAQENAVTTILNLSICEGNKAKIMESGALQPITNVVRYGCSMEARENAAATLFSL
C0PSB5_______________RLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHG-STEARENAAATLFSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain