SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41590

Length: 387 nt

UniGene Fasta

>sp_v1.1_unigene41590
CGTCGTGACCTTGGCTGTCACTCATTGTTGATTGGGATGTACACCATGGGAATGGTACACAGGAGATCTTTGAGGCAGATCAATCGGTGCTTTATATATCCTTACATAGACACGGAGAGGGTTTCTATCCTGGTAGTGGTGCTGTTACTGAGGTTGGTAGCTCCAAGGGAGAGGGATACTCGGTGAACATTCCATGGAAATGTGGAGGAGTTGGGGATAATGACTATATTTTTGCATTTCAACATGCCGTTCTTCCAATAGCGGAGCAGTTTGAACCTGATTTAACAATAATATCAGCAGGCTTTGATGCTGCAAAGGGTGATCCTCTTGGTCGCTGTGAAGTCACTCCTGATGGTTTCGCACATATGGCCCAGATGTTGAGTTGTC

Ace file of the UniGene sp_v1.1_unigene41590

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histone deacetylase HDAC4 n=1 Tax=Triticum aestivum RepID=Q0Z9W1_WHEAT	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	histone deacetylase	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	0.0	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKL4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 114 aas, your sequence is shorter than subject: 128 - 648

Fln protein: S*PWLSLIVDWDVHHGNGTQEIFEADQSVLYISLHRHGEGFYPGSGAVTEVGSSKGEGYSVNIPWKCGGVGDNDYIFAFQHAVLPIAEQFEPDLTIISAGFDAAKGDPLGRCEVTPDGFAHMAQMLSC

Protein Length: 129

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTGATTGGGATGTACACCATGGGAATGGTACACAGGAGATCTTTGAGGCAGATCAATCGGTGCTTTATATATCCTTACATAGACACGGAGAGGGTTTCTATCCTGGTAGTGGTGCTGTTACTGAGGTTGGTAGCTCCAAGGGAGAGGGATACTCGGTGAACATTCCATGGAAATGTGGAGGAGTTGGGGATAATGACTATATTTTTGCATTTCAACATGCCGTTCTTCCAATAGCGGAGCAGTTTGAACCTGATTTAACAATAATATCAGCAGGCTTTGATGCTGCAAAGGGTGATCCTCTTGGTCGCTGTGAAGTCACTCCTGATGGTTTCGCACATATGGCCCAGATGTTGAGTTGTC

Fln Alignment:

sp_v1.1_unigene41590___LIVDWDVHHGNGTQEIFEADQSVLYISLHRHGEG-FYPGSGAVTEVGSSKGEGYSVNIPWKCGGVGDNDYIFAFQHAVLPIAEQFEPDLTIISAGFDAAKGDPLGRCEVTPDGFAHMAQMLS
B8LKL4_______________LIVDWDVHHGNGTQEIFEHDNSVLYISLHRHEGGRFYPGTGAANEVGSLDGEGFSVNIPWKHGGVGDEDYIFTFQHVVLLIAEQFAPDLTIISAGFDAAKGDPLGGCEVTPFGFAYMTKMLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain