SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41550

Length: 365 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene41550
ATGGGGGTAGCCTTTTGCCGATGGATTGCTTGCACAGTTTGAATTCGCATTGTACTGTCCACGGCATGATTGGTTCTTCCACCCTTACAAAATCCATGGTCCACGCTATTAAATCATGCAATACTTCATCTTCTGTGCACTCCCTGCATTTGGGGTCCTCAGTAGAGGAATCACGGAATTTGCGTCAAACAGCTGCTGGATACAGACAAAACCTCTTCAATCGCATTGCTTCAAACTACGATCGTTTGAATGACCTGCTTAGTCTTGGGCAGCATCGAATATGGAAGCGGATGGCAGTCTCATGGAGTGGAGCCAAAGCTGGAGATAATGTGCTTGACATCTGTTGTGGAAGTGGTGACTTGACC

Ace file of the UniGene sp_v1.1_unigene41550

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquinone biosynthesis methyltransferase; K06127 ubiquinone biosynthesis methyltransferase [EC:2.1.1.-]	-	-	5.0e-19	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	ubiquinone menaquinone biosynthesis methyltransferase	-	-	2.14396e-40	82%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	5.0e-19	82%

Source	KEGGs	Term	e value	Identity
AutoFact	Ubiquinone and other terpenoid-quinone biosynthesis	00130	5.0e-19	82%
AutoFact	Tetracycline biosynthesis	00253	5.0e-19	82%
AutoFact	Histidine metabolism	00340	5.0e-19	82%
AutoFact	Tyrosine metabolism	00350	5.0e-19	82%
AutoFact	Phenylalanine metabolism	00360	5.0e-19	82%
AutoFact	Tryptophan metabolism	00380	5.0e-19	82%
AutoFact	Benzoxazinoid biosynthesis	00402	5.0e-19	82%
AutoFact	Selenocompound metabolism	00450	5.0e-19	82%
AutoFact	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	5.0e-19	82%
AutoFact	Polycyclic aromatic hydrocarbon degradation	00624	5.0e-19	82%
AutoFact	Methane metabolism	00680	5.0e-19	82%
AutoFact	Porphyrin and chlorophyll metabolism	00860	5.0e-19	82%
AutoFact	Carotenoid biosynthesis	00906	5.0e-19	82%
AutoFact	Phenylpropanoid biosynthesis	00940	5.0e-19	82%
AutoFact	Flavonoid biosynthesis	00941	5.0e-19	82%
AutoFact	Anthocyanin biosynthesis	00942	5.0e-19	82%
AutoFact	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	5.0e-19	82%
AutoFact	Isoquinoline alkaloid biosynthesis	00950	5.0e-19	82%
AutoFact	Insect hormone biosynthesis	00981	5.0e-19	82%
AutoFact	Biosynthesis of type II polyketide products	01057	5.0e-19	82%
AutoFact	Biosynthesis of alkaloids derived from shikimate pathway	01063	5.0e-19	82%
AutoFact	Metabolic pathways	01100	5.0e-19	82%
AutoFact	Biosynthesis of secondary metabolites	01110	5.0e-19	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	phylloquinone biosynthetic process	GO:0042372	Biological Process	2.14396e-40	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.14396e-40	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UbiE/COQ5 methyltransferase	IPR004033	-	2.14396e-40	82%
Blast2go	UbiE/COQ5 methyltransferase, conserved site	IPR023576	-	2.14396e-40	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSD5

Fln msg: Distance to subject end: 174 aas, your sequence is shorter than subject: 115 - 282

Fln protein: MDCLHSLNSHCTVHGMIGSSTLTKSMVHAIKSCNTSSSVHSLHLGSSVEESRNLRQTAAGYRQNLFNRIASNYDRLNDLLSLGQHRIWKRMAVSWSGAKAGDNVLDICCGSGDLT

Protein Length: 116

Fln nts: ATGGGGGTAGCCTTTTGCCG_-_ATGGATTGCTTGCACAGTTTGAATTCGCATTGTACTGTCCACGGCATGATTGGTTCTTCCACCCTTACAAAATCCATGGTCCACGCTATTAAATCATGCAATACTTCATCTTCTGTGCACTCCCTGCATTTGGGGTCCTCAGTAGAGGAATCACGGAATTTGCGTCAAACAGCTGCTGGATACAGACAAAACCTCTTCAATCGCATTGCTTCAAACTACGATCGTTTGAATGACCTGCTTAGTCTTGGGCAGCATCGAATATGGAAGCGGATGGCAGTCTCATGGAGTGGAGCCAAAGCTGGAGATAATGTGCTTGACATCTGTTGTGGAAGTGGTGACTTGACC

Fln Alignment:

sp_v1.1_unigene41550___MDCLHSLNSHCTVHGMIGSSTLTKSMVHAIKSCNTXXXXXXXXXXXXXEESRNLRQTAAGYRQNLFNRIASNYDRLNDLLSLGQHRIWKRMAVSWSGAKAGDNVLDICCGSGDLT
A9NSD5_______________MDCLYSLNSHCTVHGMLDSSALPRSVVHAIKSCNASSSVHSSV-----EEAWNLRQT--GHRQSLFNRIASNYDHLNDLLSLGQHRVWKRMAVSWSGAKAGDIVLDICCGSGDLT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
187		66	33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain