SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41544

Length: 400 nt

UniGene Fasta

>sp_v1.1_unigene41544
AGTGGGGGACACTTACAGCTATGGCAGACAGAAATATCGCAGATATCCTTTGGTGAAGGAGTCTGCCCCAACCTGAAACAGCTGGACATCAGACATTGTGCTCATCTGGTGGAAATTGGAGCGTTGCCACCAACACTCATCAGGCTGAAATTGTATAAATGCCGGCGACTGAGGAGAATAGAAGGTATCTGTAATCTTACAAGACTTCAAAAGCTAAACATCAGAAAGTGTGTAGAACTGGAGGATCTCCCCAGTCTTGAACGGTTGACAGCTCTGCAGAAGTTCGCGGCGGATGAATGTTCTAAGCTAAGAAGAATAAAGGGATTGGGGCAGCTAGCGGCGCTTCGAATCCTGTATGTGTCTTCTTGCAAGGCACTAGAAGAACTCACAGGTATTGAAA

Ace file of the UniGene sp_v1.1_unigene41544

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J6_PINTA	-	-	3.0e-11	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	tir-nbs-lrr protein	-	-	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMZ7

Fln msg: Distance to subject end: 35 aas, your sequence is shorter than subject: 133 - 618

Fln protein: SGGHLQLWQTEISQISFGEGVCPNLKQLDIRHCAHLVEIGALPPTLIRLKLYKCRRLRRIEGICNLTRLQKLNIRKCVELEDLPSLERLTALQKFAADECSKLRRIKGLGQLAALRILYVSSCKALEELTGIE

Protein Length: 134

Fln nts: AGTGGGGGACACTTACAGCTATGGCAGACAGAAATATCGCAGATATCCTTTGGTGAAGGAGTCTGCCCCAACCTGAAACAGCTGGACATCAGACATTGTGCTCATCTGGTGGAAATTGGAGCGTTGCCACCAACACTCATCAGGCTGAAATTGTATAAATGCCGGCGACTGAGGAGAATAGAAGGTATCTGTAATCTTACAAGACTTCAAAAGCTAAACATCAGAAAGTGTGTAGAACTGGAGGATCTCCCCAGTCTTGAACGGTTGACAGCTCTGCAGAAGTTCGCGGCGGATGAATGTTCTAAGCTAAGAAGAATAAAGGGATTGGGGCAGCTAGCGGCGCTTCGAATCCTGTATGTGTCTTCTTGCAAGGCACTAGAAGAACTCACAGGTATTGAAA

Fln Alignment:

sp_v1.1_unigene41544___GHLQLWQTEISQISFGEGVCPNLKQLDIRHCAHLVEIGALPPTXXXXXXXXXXXXXXXEGICNLTRLQKLNIRKCVELEDLPSLERLTALQKFAADECSKLRRIKGLGQLAALRILYVSSCKALEELTGIE
B8LMZ7_______________GYLQLWQTEISHISFGEGVCPNLKQLDIRSCAHLVDVGALPPTLIRLKLYKCRRLSKIEGICNLTKLRKLNIRKCIEVEDLPSLERLTSLEKFSADECSKLKRIKGLGQLAALRILYMSSCKALEELTGVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain