SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41529

Length: 520 nt

UniGene Fasta

>sp_v1.1_unigene41529
GATGAGCGCAGCCACGACCCAATTGTGGTCGGAAGAATTTACATCAACTTTCTTGCCGATCGTTGCTTGATAGAACCGACATTGAGAGACGTGGATGGGTCCGTGATATATTTCAGGGTGCACGACGTTCTGCGTGATTTGGCAATACAAATCGCTGAGCGGGAAGAAAACTTTTACTGCCGGACAGGTAAGCGTTTGGCAGCGTTGCCTGAAAATGAATGTTCAGGGCGCACTCGGTTTTTGTTGAGATCTAACGATTTCAGTTCGCTTCCAGAGTCATTCCGCCCTCCAGAAATCTCCTCACTGTTAATGGCGGGAAATGCAAATCTCAGAGAGATCCCAAGAAAAGTGATTGGGAGTATGGTCTCCCTGAAGGTTTTGGACTTGAGTTGGACGCCCCTCCAGTCATTGCCGGACAGTGTGGGTTGTTTGAAACAATTGGTATCCCTACTGTTAGAAGGCGTGCCCATCAGAAGGCTGCCTGCATCAGTTACAGAACTTGCATGCCTAGAGTTCTCGA

Ace file of the UniGene sp_v1.1_unigene41529

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BED finger-nbs-lrr resistance protein n=1 Tax=Populus trichocarpa RepID=B9NDT1_POPTR	-	-	2.0e-16	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	bed finger-nbs-lrr resistance protein	-	-	5.02431e-22	50%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	5.02431e-22	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR16

Fln msg: Distance to subject end: 340 aas, your sequence is shorter than subject: 173 - 966

Fln protein: DERSHDPIVVGRIYINFLADRCLIEPTLRDVDGSVIYFRVHDVLRDLAIQIAEREENFYCRTGKRLAALPENECSGRTRFLLRSNDFSSLPESFRPPEISSLLMAGNANLREIPRKVIGSMVSLKVLDLSWTPLQSLPDSVGCLKQLVSLLLEGVPIRRLPASVTELACLEFS

Protein Length: 174

Fln nts: GATGAGCGCAGCCACGACCCAATTGTGGTCGGAAGAATTTACATCAACTTTCTTGCCGATCGTTGCTTGATAGAACCGACATTGAGAGACGTGGATGGGTCCGTGATATATTTCAGGGTGCACGACGTTCTGCGTGATTTGGCAATACAAATCGCTGAGCGGGAAGAAAACTTTTACTGCCGGACAGGTAAGCGTTTGGCAGCGTTGCCTGAAAATGAATGTTCAGGGCGCACTCGGTTTTTGTTGAGATCTAACGATTTCAGTTCGCTTCCAGAGTCATTCCGCCCTCCAGAAATCTCCTCACTGTTAATGGCGGGAAATGCAAATCTCAGAGAGATCCCAAGAAAAGTGATTGGGAGTATGGTCTCCCTGAAGGTTTTGGACTTGAGTTGGACGCCCCTCCAGTCATTGCCGGACAGTGTGGGTTGTTTGAAACAATTGGTATCCCTACTGTTAGAAGGCGTGCCCATCAGAAGGCTGCCTGCATCAGTTACAGAACTTGCATGCCTAGAGTTCTCGA

Fln Alignment:

sp_v1.1_unigene41529___VGRIYINFLADRCLIEPTLRDVDG-SVIYFRVHDVLRDLAIQIAEREENFYCRTGKRLAALPENECS-GRTRFLLRSNDFSSLPESFRPPEISSLLMAGNANLREIPRKVIGSMVSLKVLDLSWTPLQSLPDSVGCLKQLVSLLLEG-VPIRRLPASVTELACLEF
B8LR16_______________IGREYIDLLVSRCLVQ--YADWPGFKQQSLRVHDVLRDMAIYVGQREENWLFAAGQHLQDFPSQEQTLDCKRISIFGNDIHDLPMNFRCPKLVSLVLSCNENLTEVPEGFLSNLASLRVLDLSKTSISSLPTSLGQLGQLELLDLSGCTSLKDLPESICNLHGLQF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain