SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41501

Length: 364 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene41501
TCCAGCATGATTTGGAAAAAGCTGAGGAATCTTATGGGAGGGCCATACTAGCCAATCCTGGCGATGGAGATGTCCTCTCACTTTATGCCGATCTGATATGGGGTGTTCATAAAGATGCATCTCGTGCACAATATTACTTTGAGCAAGCTGTTAAAGCTGCTCCAGGTAACTGCGGGAAGGTTCGAAATTTGAAAAATCGACACGGNGGCCCCCGTTGGAGCTTGGAAACAATCGTGCGAGACTCCACCTATGTCGACACGAGCCGCAGCCTGCTTTCTCACCGTGATAAAAGCTCTCCGGCCTTCAGACGGCCCTGTATAGCACAGGTTCTCGAGGAGCCTTAAAATGGGCATTCTCCGCTGCC

Ace file of the UniGene sp_v1.1_unigene41501 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	o-linked n-acetylglucosamine	-	-	4.07156e-15	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tetratricopeptide-like helical	IPR011990	-	4.07156e-15	76%
Blast2go	Tetratricopeptide repeat-containing domain	IPR013026	-	4.07156e-15	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR76

Fln msg: your sequence is shorter than subject: 114 - 387

Fln protein: QHDLEKAEESYGRAILANPGDGDVLSLYADLIWGVHKDASRAQYYFEQAVKAAPGNCGKVRNLKNRHGGPRWSLETIVRDSTYVDTSRSLLSHRDKSSPAFRRPCIAQVLEEP*

Protein Length: 115

Fln nts: TCCAGCATGATTTGGAAAAAGCTGAGGAATCTTATGGGAGGGCCATACTAGCCAATCCTGGCGATGGAGATGTCCTCTCACTTTATGCCGATCTGATATGGGGTGTTCATAAAGATGCATCTCGTGCACAATATTACTTTGAGCAAGCTGTTAAAGCTGCTCCAGGTAACTGCGGGAAGGTTCGAAATTTGAAAAATCGACACGGtGGCCCCCGTTGGAGCTTGGAAACAATCGTGCGAGACTCCACCTATGTCGACACGAGCCGCAGCCTGCTTTCTCACCGTGATAAAAGCTCTCCGGCCTTCAGACGGCCCTGTATAGCACAGGTTCTCGAGGAGCCTTAA___AATGGGCATTCTCCGCTGCC

Fln Alignment:

sp_v1.1_unigene41501___QHDLEKAEESYGRAILANPGDGDVLSLYADLIWGVHKDASRAQYYFEQAVKAAPGNC
B8LR76_______________QHDMAKAEEYYGRAILASPGDAEVLSLYAKFTWETQNDGARAESYFDRAVKAAPDDC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain