SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41485

Length: 391 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene41485
CATCGACACTGTTAAGACCCGCCTTATGATGCAGAGGGAGTCTACTCAAATGGGAAGCTACAAGAATGGATTTCATTGTGCTTACAAGGTAATACTGAGTGAGGGTCCACAAGCACTTTATAAAGGAAGTACTGCATTGTTTGCAAGATTGGGACCCCAAACTGCTATTACCTTTACTGTCTATGAGAAAGTGCGGGAGATTGTTGGAATGAAAGCTTTATAATACTTCAGAAAGTTAGTTCACAGTTCATAATCCGTAACCAGGGTTCCATTGGTGCATGATTCAAAGAAGAAGCTCCAAGGCATTGCAAAAGCTTCCTTATGCTAACATTTTAGAAAAAAGCATTGATCGAGGTCTCATCGATGATTTGTACAATTGATCATATATTTA

Ace file of the UniGene sp_v1.1_unigene41485 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mito_carr domain containing protein	-	-	2.0e-16	33%
FL-Next	tr=Putative mitochondrial dicarboxylate carrier protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	40%
Blast2go	unnamed protein product [Vitis vinifera]	-	-	7.64507e-22	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mitochondrial substrate/solute carrier	IPR018108	-	7.64507e-22	77%
Blast2go	Mitochondrial carrier domain	IPR023395	-	7.64507e-22	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B2KZK2

Fln msg: your sequence is shorter than subject: 74 - 144

Fln protein: IDTVKTRLMMQRESTQMGSYKNGFHCAYKVILSEGPQALYKGSTALFARLGPQTAITFTVYEKVREIVGMKAL*

Protein Length: 75

Fln nts: CATCGACACTGTTAAGACCCGCCTTATGATGCAGAGGGAGTCTACTCAAATGGGAAGCTACAAGAATGGATTTCATTGTGCTTACAAGGTAATACTGAGTGAGGGTCCACAAGCACTTTATAAAGGAAGTACTGCATTGTTTGCAAGATTGGGACCCCAAACTGCTATTACCTTTACTGTCTATGAGAAAGTGCGGGAGATTGTTGGAATGAAAGCTTTATAA___TACTTCAGAAAGTTAGTTCACAGTTCATAATCCGTAACCAGGGTTCCATTGGTGCATGATTCAAAGAAGAAGCTCCAAGGCATTGCAAAAGCTTCCTTATGCTAACATTTTAGAAAAAAGCATTGATCGAGGTCTCATCGATGATTTGTACAATTGATCATATATTTA

Fln Alignment:

sp_v1.1_unigene41485___IDTVKTRLM-MQRESTQMGSYKNGFHCAYKVILSEGPQALYKGSTALFARLGPQTAITFTVYEKVRE
B2KZK2_______________VDVIKTRIMNMNPKPGZPAPYSGALDCAMKTIKAEGPMALYKGFIPTVTRQGPFTVVLFVTLEQVRK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
353	33			66	0.997476
354		66	33		0.997476
358	33	66			0.997476
362	66		33		0.997471
366		33		66	0.997471
367	66		33		0.997476
369		33	66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain