SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41423

Length: 399 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene41423
GTTTCGCTGCAGACGACACACAAGACGAGTAGTGCACATAGATCTTCATGGATCTGAGTTGGAAGGTACTCTGTCTTTTTCTCTTGGTAGCCTTTCTTTGTTGAAGGTTTTGAATCTTTCTGATAATAATTTGAGTGGAGTAATTCCGCCCGAATTTGGGCGACTTAAAGCACTGAGAATACTCGATCTTAGCAATAATTGGATTCTCGGAGGATCTGTTCCCAAGTCATTGTGTAATTGCAGCCGGCTCAAATGGATCGGACTTAGCTCAATCAACTTGACAGGAACCATACCTGCAGAGTTTGGTCGTCTAGTCGAGTTGGAACATCTAGACTTGAGTGAAAATTCACATCTGAGTGGGAGTATTCCAGCTACTTGGGCAACTGCACCTCTCTATCT

Ace file of the UniGene sp_v1.1_unigene41423

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	protein kinase receptor type precursor	-	-	4.12957e-31	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	4.12957e-31	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Distance to subject end: 115 aas, your sequence is shorter than subject: 132 - 946

Fln protein: FRCRRHTRRVVHIDLHGSELEGTLSFSLGSLSLLKVLNLSDNNLSGVIPPEFGRLKALRILDLSNNWILGGSVPKSLCNCSRLKWIGLSSINLTGTIPAEFGRLVELEHLDLSENSHLSGSIPATWATAPLY

Protein Length: 133

Fln nts: GTTTCGCTGCAGACGACACACAAGACGAGTAGTGCACATAGATCTTCATGGATCTGAGTTGGAAGGTACTCTGTCTTTTTCTCTTGGTAGCCTTTCTTTGTTGAAGGTTTTGAATCTTTCTGATAATAATTTGAGTGGAGTAATTCCGCCCGAATTTGGGCGACTTAAAGCACTGAGAATACTCGATCTTAGCAATAATTGGATTCTCGGAGGATCTGTTCCCAAGTCATTGTGTAATTGCAGCCGGCTCAAATGGATCGGACTTAGCTCAATCAACTTGACAGGAACCATACCTGCAGAGTTTGGTCGTCTAGTCGAGTTGGAACATCTAGACTTGAGTGAAAATTCACATCTGAGTGGGAGTATTCCAGCTACTTGGGCAACTGCACCTCTCTATCT

Fln Alignment:

sp_v1.1_unigene41423___RCRRHTRRVVHIDLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVIPPEFGRLKALRILDLSNNWILGGSVPKSLCNCSRLKWIGLSSINLTGTIPAEFGRLVELEHLDLSENSHLSGSIPAT
C0PTA1_______________RCRPHSRRVVQIELSSSGLEGILSSSLGSLSFLKTLDLSANNLTGGIPPEFGRLKALRTLDLTFNEMLGGSVPKSLLNCTHLKWIGLANINLTGTIPTEFGRLVELEHLDLSSNYYLSGSIPTS

SNPs (tot: 4)

Position	C %	G %	T %	Probability
86		33	66	0.997467
136	33	66		0.997471
137	33		66	0.997471
185	66		33	0.997471

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain