SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41419

Length: 270 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene41419
TGATGTGGTTGGGACGCTTTTTGGGTCATAGAAATGTGCCTGTGATTTCAACCGGTTCACTTAATCTTGATGTTGCACTTGGCATTGGTGGGTTTCCAAAGGGACGAATGGTTGAAATATATGGGCCTGAGGCGTCAGGGAAAACAACCCTTGGTCTTCATGCCATAGCTGAGGCCCAAAGGAATGGAGGTCACTGTCTCTTTGTTGATGCAGAGCATGCCCTAGATCGAACACTTGCAGAAGCTATAGGTGTAAATACGAAGAATTTAC

Ace file of the UniGene sp_v1.1_unigene41419 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	IDP355; LOC100191367; K03553 recombination protein RecA	-	-	3.0e-32	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	6.2943e-40	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	6.2943e-40	85%
Blast2go	binding	GO:0005488	Molecular Function	6.2943e-40	85%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	6.2943e-40	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA recombination and repair protein RecA	IPR013765	-	6.2943e-40	85%
Blast2go	DNA recombination/repair protein RecA/RadB, ATP-binding domain	IPR020588	-	6.2943e-40	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRS8

Fln msg: Distance to subject end: 250 aas, your sequence is shorter than subject: 89 - 454

Fln protein: MWLGRFLGHRNVPVISTGSLNLDVALGIGGFPKGRMVEIYGPEASGKTTLGLHAIAEAQRNGGHCLFVDAEHALDRTLAEAIGVNTKNL

Protein Length: 90

Fln nts: TGATGTGGTTGGGACGCTTTTTGGGTCATAGAAATGTGCCTGTGATTTCAACCGGTTCACTTAATCTTGATGTTGCACTTGGCATTGGTGGGTTTCCAAAGGGACGAATGGTTGAAATATATGGGCCTGAGGCGTCAGGGAAAACAACCCTTGGTCTTCATGCCATAGCTGAGGCCCAAAGGAATGGAGGTCACTGTCTCTTTGTTGATGCAGAGCATGCCCTAGATCGAACACTTGCAGAAGCTATAGGTGTAAATACGAAGAATTTAC

Fln Alignment:

sp_v1.1_unigene41419___MWLGRFLGHRNVPVISTGSLNLDVALGIGGFPKGRMVEIYGPEASGKTTLGLHAIAEAQRNGGHCLFVDAEHALDRTLAEAIGVNTKNL
B8LRS8_______________MWLGRFLGRRNVPVISTGSLNLDVALGIGGFPKGRMVEIYGPEASGKTTLGLHTIAEAQRNGGYCVFIDAEHALDPSLAEAIGVKTENL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain