SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41387

Length: 318 nt

UniGene Fasta

>sp_v1.1_unigene41387
GTTTAAACCAGAGGTAGTGGCAGCAAAACGCAAACACCGTGTGCATATTCTTGTCTGCGCACCTTCCAATTCTGCTTTGGATGAAATTGTTCTCCGTTTGATGAACACAGGTATTCGTGATGAAAATGGTCAAGTCTACAGTCCAAGTATTGTGCGAGTTGGTTTGCAAGCCCATCATTCTGTACAAGCAGTGTCAATGGACTATCTTGTGGAACAGCGTTTGAGCAGCATGGATAGAGCAGCTGCTATTTCTGGGCCTAATGTGGGTTCTGCAGCAATGAATCGTGACCTCGTTCGGGCTGCAATTCTTGATGAAGC

Ace file of the UniGene sp_v1.1_unigene41387

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	67%
Blast2go	sen1 like protein	-	-	2.59684e-33	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo sac development	GO:0009553	Biological Process	2.59684e-33	79%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	2.59684e-33	79%
Blast2go	pollen-pistil interaction	GO:0009875	Biological Process	2.59684e-33	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9T7T5

Fln msg: Distance to subject end: 388 aas, your sequence is shorter than subject: 105 - 911

Fln protein: FKPEVVAAKRKHRVHILVCAPSNSALDEIVLRLMNTGIRDENGQVYSPSIVRVGLQAHHSVQAVSMDYLVEQRLSSMDRAAAISGPNVGSAAMNRDLVRAAILDE

Protein Length: 106

Fln nts: GTTTAAACCAGAGGTAGTGGCAGCAAAACGCAAACACCGTGTGCATATTCTTGTCTGCGCACCTTCCAATTCTGCTTTGGATGAAATTGTTCTCCGTTTGATGAACACAGGTATTCGTGATGAAAATGGTCAAGTCTACAGTCCAAGTATTGTGCGAGTTGGTTTGCAAGCCCATCATTCTGTACAAGCAGTGTCAATGGACTATCTTGTGGAACAGCGTTTGAGCAGCATGGATAGAGCAGCTGCTATTTCTGGGCCTAATGTGGGTTCTGCAGCAATGAATCGTGACCTCGTTCGGGCTGCAATTCTTGATGAAGC

Fln Alignment:

sp_v1.1_unigene41387___FKPEVVAAKRKHRVHILVCAPSNSALDEIVLRLMNTGIRDENGQVYSPSIVRVGLQAHHSVQAVSMDYLVEQRLSSMDRAAAISGPNVGSAAMNRDLVRAAILDE
A9T7T5_______________FRPESIAAKRKHRKHVLVCAPSNSALDEIVLRLLNTGLRDENGQAYTPNVVRVGLNAHHSVSAVTMDTLVNQRLSGVQKSVVSAGPK-ASAGMERDRCRISILDE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
124	66		33		0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain