SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41333

Length: 461 nt

UniGene Fasta

>sp_v1.1_unigene41333
CTACGGCCATACTCAGTGATAGGAACAGTGATAGGAATACTATCTGTTTCTCTGTTGACTGTTGAAAGTGGATCTGATCTTTCTCATGTGTTTTTCATTGAGCTTCTAAAGGCTTTGGTACCGGCCGTCTTAATGAATATTTATGTTCAGGGGTTTAACCAACTGTTCGATGTTGAAATAGACAAGATTAACAAGCCATACCTTCCTCTTGCCTCTGGTGAATATTCCATGGAAGCAGGTGGAGCAATTGTTGTGCTTTCGGCCTTCACGAGTCTTACCATGGGATGGATGATTGGCTCAGCTCCTTTGCTTTGGGCTCTATGGTTGGGCTTTGCTGTGGGAACTGCATACTCAGTTGATCTTCCATTGTTAAGGTGGAAACGATTTGCTCTTGCTGCTGCAACGTCCATTCTCTGTGTAAGGGCAATTGCTGTTCAACTCGCCTTTTACCAACATATACA

Ace file of the UniGene sp_v1.1_unigene41333

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Homogentisate phytyltransferase VTE2-1 n=1 Tax=Allium ampeloprasum RepID=Q1ACB6_ALLPO	-	-	62%
FL-Next	sp=Homogentisate phytyltransferase 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	homogentisate phytyltransferase	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	77%
Blast2go	vitamin E biosynthetic process	GO:0010189	Biological Process	77%
Blast2go	response to temperature stimulus	GO:0009266	Biological Process	77%
Blast2go	unsaturated fatty acid biosynthetic process	GO:0006636	Biological Process	77%
Blast2go	regulation of defense response	GO:0031347	Biological Process	77%
Blast2go	phloem sucrose loading	GO:0009915	Biological Process	77%
Blast2go	homogentisate phytyltransferase activity	GO:0010176	Molecular Function	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UbiA prenyltransferase family	IPR000537	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8VWJ1

Fln msg: Distance to subject end: 136 aas, your sequence is shorter than subject: 153 - 393

Fln protein: LRPYSVIGTVIGILSVSLLTVESGSDLSHVFFIELLKALVPAVLMNIYVQGFNQLFDVEIDKINKPYLPLASGEYSMEAGGAIVVLSAFTSLTMGWMIGSAPLLWALWLGFAVGTAYSVDLPLLRWKRFALAAATSILCVRAIAVQLAFYQHI

Protein Length: 154

Fln nts: CTACGGCCATACTCAGTGATAGGAACAGTGATAGGAATACTATCTGTTTCTCTGTTGACTGTTGAAAGTGGATCTGATCTTTCTCATGTGTTTTTCATTGAGCTTCTAAAGGCTTTGGTACCGGCCGTCTTAATGAATATTTATGTTCAGGGGTTTAACCAACTGTTCGATGTTGAAATAGACAAGATTAACAAGCCATACCTTCCTCTTGCCTCTGGTGAATATTCCATGGAAGCAGGTGGAGCAATTGTTGTGCTTTCGGCCTTCACGAGTCTTACCATGGGATGGATGATTGGCTCAGCTCCTTTGCTTTGGGCTCTATGGTTGGGCTTTGCTGTGGGAACTGCATACTCAGTTGATCTTCCATTGTTAAGGTGGAAACGATTTGCTCTTGCTGCTGCAACGTCCATTCTCTGTGTAAGGGCAATTGCTGTTCAACTCGCCTTTTACCAACATATACA

Fln Alignment:

sp_v1.1_unigene41333___RPYSVIGTVIGILSVSLLTVESGSDLSHVFFIELLKALVPAVLMNIYVQGFNQLFDVEIDKINKPYLPLASGEYSMEAGGAIVVLSAFTSLTMGWMIGSAPLLWALWLGFAVGTAYSVDLPLLRWKRFALAAATSILCVRAIAVQLAFYQHI
Q8VWJ1_______________RPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHI

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
207			33	66	0.997452
213		66	33		0.997452
225		33		66	0.997454
230	33			66	0.997452
255	33		66		0.997452
260		66		33	0.997452
294		33		66	0.997452
303	33			66	0.997453
325	33			66	0.997452
355	33		66		0.997452
361		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain