SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41156

Length: 562 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene41156
GAGCTATATGCAGGAGTAGGTATGTTGGTCTTTCTCTAGCTTCAAGAAGGAAGTGCAGGTCAGTGAAGTGTGTAGAGATTAATAAGGAATCAAAGCTACCATTTGAGAAGTCACTTGCTCGTTTGCCAAAGTCACTAGACTGCAGCATTAGTTGGCACTGTGCTGATGTCTCAGTGGCTCCAATCCATTGGTTAGAGAGTTCAGACATAGTGGTGGTTGATCCTCCAAGGAAAGGTCTGGATGCCTCTGTAATTGATGCTCTACAAATAGCATCATTACGTGGGCAGGAAGCAGTAGAGGTCCCTAACAGGGTTGAGAAAAGACCATGGCTTATGCGAGCTCAGAAAGCCAGTGTTAAGAAAGAAAGTAAAACCAACTGGGATGAAACTGCATCATGGCCTGAAACTTTAATTTATGTGAGCTGTGGCTGGGAGAGTTTTAAACAGGATTGTCGAGCATTACTGTCTAACAAGGCATGGCATCTAGAAAATGCACACGCCTTCAATTTTTTCCCTGGAACGGATAGTATTGAAGTCCTTGCTGTTTTCAAGCGTGGACCGCG

Ace file of the UniGene sp_v1.1_unigene41156

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rumA; putative 23S rRNA (uracil-5-)-methyltransferase; K00599 [EC:2.1.1.-]	-	-	2.0e-14	30%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	63%
Blast2go	protein	-	-	0.0	72%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	2.0e-14	30%

Source	KEGGs	Term	e value	Identity
AutoFact	Ubiquinone and other terpenoid-quinone biosynthesis	00130	2.0e-14	30%
AutoFact	Tetracycline biosynthesis	00253	2.0e-14	30%
AutoFact	Histidine metabolism	00340	2.0e-14	30%
AutoFact	Tyrosine metabolism	00350	2.0e-14	30%
AutoFact	Phenylalanine metabolism	00360	2.0e-14	30%
AutoFact	Tryptophan metabolism	00380	2.0e-14	30%
AutoFact	Benzoxazinoid biosynthesis	00402	2.0e-14	30%
AutoFact	Selenocompound metabolism	00450	2.0e-14	30%
AutoFact	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	2.0e-14	30%
AutoFact	Polycyclic aromatic hydrocarbon degradation	00624	2.0e-14	30%
AutoFact	Methane metabolism	00680	2.0e-14	30%
AutoFact	Porphyrin and chlorophyll metabolism	00860	2.0e-14	30%
AutoFact	Carotenoid biosynthesis	00906	2.0e-14	30%
AutoFact	Phenylpropanoid biosynthesis	00940	2.0e-14	30%
AutoFact	Flavonoid biosynthesis	00941	2.0e-14	30%
AutoFact	Anthocyanin biosynthesis	00942	2.0e-14	30%
AutoFact	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	2.0e-14	30%
AutoFact	Isoquinoline alkaloid biosynthesis	00950	2.0e-14	30%
AutoFact	Insect hormone biosynthesis	00981	2.0e-14	30%
AutoFact	Biosynthesis of type II polyketide products	01057	2.0e-14	30%
AutoFact	Biosynthesis of alkaloids derived from shikimate pathway	01063	2.0e-14	30%
AutoFact	Metabolic pathways	01100	2.0e-14	30%
AutoFact	Biosynthesis of secondary metabolites	01110	2.0e-14	30%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SVR3

Fln msg: Distance to subject end: 16 aas, your sequence is shorter than subject: 186 - 497

Fln protein: AICRSRYVGLSLASRRKCRSVKCVEINKESKLPFEKSLARLPKSLDCSISWHCADVSVAPIHWLESSDIVVVDPPRKGLDASVIDALQIASLRGQEAVEVPNRVEKRPWLMRAQKASVKKESKTNWDETASWPETLIYVSCGWESFKQDCRALLSNKAWHLENAHAFNFFPGTDSIEVLAVFKRGP

Protein Length: 187

Fln nts: GAGCTATATGCAGGAGTAGGTATGTTGGTCTTTCTCTAGCTTCAAGAAGGAAGTGCAGGTCAGTGAAGTGTGTAGAGATTAATAAGGAATCAAAGCTACCATTTGAGAAGTCACTTGCTCGTTTGCCAAAGTCACTAGACTGCAGCATTAGTTGGCACTGTGCTGATGTCTCAGTGGCTCCAATCCATTGGTTAGAGAGTTCAGACATAGTGGTGGTTGATCCTCCAAGGAAAGGTCTGGATGCCTCTGTAATTGATGCTCTACAAATAGCATCATTACGTGGGCAGGAAGCAGTAGAGGTCCCTAACAGGGTTGAGAAAAGACCATGGCTTATGCGAGCTCAGAAAGCCAGTGTTAAGAAAGAAAGTAAAACCAACTGGGATGAAACTGCATCATGGCCTGAAACTTTAATTTATGTGAGCTGTGGCTGGGAGAGTTTTAAACAGGATTGTCGAGCATTACTGTCTAACAAGGCATGGCATCTAGAAAATGCACACGCCTTCAATTTTTTCCCTGGAACGGATAGTATTGAAGTCCTTGCTGTTTTCAAGCGTGGACCGCG

Fln Alignment:

sp_v1.1_unigene41156___VGLSLASRRKCRSVKCVEINKESKLPFEKSLARLPKSLDCSISWHCADVSVAPIHWLESSDIVVVDPPRKGLDASVIDALQIASLRGQEAVEVPN-----RVEKRPWLMRAQKASVKKESKTNWDETASWPETLIYVSCGWESFKQDCRALLSNKAWHLENAHAFNFFPGTDSIEVLAVFKRGP
D7SVR3_______________IGLSLAATRKCRSVKCIEINKEARLSFEKTVGRLPKSIDTTISWHHADTSIGPLSWLMGSDVVVVDPPRKGLDPSLVDALRTLSLAEKRAMLTERSFSKVKNEKRPWILRAREASVQIESKTSPEEGQSLPKTLIYISCGWESFKEDCKSLLSRKEWHLDKAHGFNFFPGTQSIEVLAVFKRGP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain