SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41138

Length: 482 nt

UniGene Fasta

>sp_v1.1_unigene41138
GGTACTGAACTGGCTGGTCTGTGCATGGAGCTTGGCATCATTCATTATTAATCCATGGTGCCACGCTCTTCCTCAAGAAGCTCGAATCCTCCTGCAAATGAAGGAAAGCTTCAAGGATGGTCGTGACCTTGGTTGTCACTGGATGTTAGACTCTGTCAATGCACCCTGCAATTGGGAAGGAATCACCTGCGACAATTCTACAGGTATGGTCACTGAAATCGTACTCGAAGACAAATCTCTCAACGGCCCTCTCTATTCCGGCCTATGCAATTTGCAGAGCTTGGAAAAGCTCCATTTGGGTTTCAATAGCTTGTATGGGATTCTGCTACCGCCTCTCACGAATTGCAGCAACCTCCAATCCCTCAATCTCACCACAAATTCTCTGTCTGGTACTTTGCCGGACTTTTCTGGACTAAAGTCGTTGAAGATGCTCGACCTCACGACTAAACAAAATTACACAGGCCAATTCCCTACTTCTCTGG

Ace file of the UniGene sp_v1.1_unigene41138

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat transmembrane protein kinase n=1 Tax=Glycine max RepID=C6ZRU4_SOYBN	-	-	2.0e-15	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	lrr xi-23 atp binding kinase protein kinase protein serine threonine kinase	-	-	4.06259e-15	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	4.06259e-15	61%
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	4.06259e-15	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1G6

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 160 - 291

Fln protein: VLNWLVCAWSLASFIINPWCHALPQEARILLQMKESFKDGRDLGCHWMLDSVNAPCNWEGITCDNSTGMVTEIVLEDKSLNGPLYSGLCNLQSLEKLHLGFNSLYGILLPPLTNCSNLQSLNLTTNSLSGTLPDFSGLKSLKMLDLTTKQNYTGQFPTSL

Protein Length: 161

Fln nts: GGTACTGAACTGGCTGGTCTGTGCATGGAGCTTGGCATCATTCATTATTAATCCATGGTGCCACGCTCTTCCTCAAGAAGCTCGAATCCTCCTGCAAATGAAGGAAAGCTTCAAGGATGGTCGTGACCTTGGTTGTCACTGGATGTTAGACTCTGTCAATGCACCCTGCAATTGGGAAGGAATCACCTGCGACAATTCTACAGGTATGGTCACTGAAATCGTACTCGAAGACAAATCTCTCAACGGCCCTCTCTATTCCGGCCTATGCAATTTGCAGAGCTTGGAAAAGCTCCATTTGGGTTTCAATAGCTTGTATGGGATTCTGCTACCGCCTCTCACGAATTGCAGCAACCTCCAATCCCTCAATCTCACCACAAATTCTCTGTCTGGTACTTTGCCGGACTTTTCTGGACTAAAGTCGTTGAAGATGCTCGACCTCACGACTAAACAAAATTACACAGGCCAATTCCCTACTTCTCTGG

Fln Alignment:

sp_v1.1_unigene41138___EARILLQMKESFKDGRDLGCHWMLDSVNAPCNWEGITCDNSTGMVTEIVLEDKSLNGPL-YSGLCNLQSLEKLHLGFNSLYG-ILLPPXXXXXXXXXXXXXXXXXXXXXPDFSGLKSLKMLDLT
A9P1G6_______________EIQILLSIKSGLRDSTNAFQGWE-SSAASPCKWNGITC-NTAGSVTEINLENNGLSGPIPSSAICSLKALTSIQLGNNSLHGNIPDGQWINCSQLETLNLTSNLLTGTLPDFSALRSLKSLGLS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain