SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene41084

Length: 486 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene41084
AGTTCAGCGAACAGTATTCCAAAAAGACTCTCTCAGAGGTTTGAGCGCGATTTACTGCCTGTGGATATATTTATATGCACCGCTGATCCTATCAAAGAACCTCCACTGACTCTTATAAACACAGTATTGTCCGCTCTGGCTATAGATTATCCTGTGGAAAATTGTCATGTTATGTTTCTGATGATGGAGGATCGCCGCTGACATTTTATGCTCTCCTGGAAGCTTCACGTTTTGCAAAGATTTGGATTCCATTTTGTGATAACTACTCCATTCAAGACAGATGTCCAGAGGCATACTTCTCAAATTCCAATGCTCTGGAAAATGTGAATTTGCACTTCACAAGAGACTGGAAACATGCAAATAAAATGTATTTCGAATTGAAGGATCGAATTAACGAAGTTATGGAGATGGGCAGTGTTCCAGCGAACAAACAGAAAGAACACAAGGGATTCAAGGACTGGGTTTCTGGAAGCAGTAGGCGAGATC

Ace file of the UniGene sp_v1.1_unigene41084 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cellulose synthase-like protein CslE [Nicotiana tabacum]	-	-	2.0e-36	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	coated vesicle membrane	-	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LK55

Fln msg: Overlapping hits, possible frame ERROR between 171 and 156, Distance to subject end: 509 aas, your sequence is shorter than subject: 162 - 744

Fln protein: SSANSIPKRLSQRFERDLLPVDIFICTADPIKEPPLTLINTVLSALAIDYPxxxxxxxVSDDGGSPLTFYALLEASRFAKIWIPFCDNYSIQDRCPEAYFSNSNALENVNLHFTRDWKHANKMYFELKDRINEVMEMGSVPANKQKEHKGFKDWVSGSSRRD

Protein Length: 163

Fln nts: AGTTCAGCGAACAGTATTCCAAAAAGACTCTCTCAGAGGTTTGAGCGCGATTTACTGCCTGTGGATATATTTATATGCACCGCTGATCCTATCAAAGAACCTCCACTGACTCTTATAAACACAGTATTGTCCGCTCTGGCTATAGATTATCCTxxxxxxxxxxxxxxxxxxxxxGTTTCTGATGATGGAGGATCGCCGCTGACATTTTATGCTCTCCTGGAAGCTTCACGTTTTGCAAAGATTTGGATTCCATTTTGTGATAACTACTCCATTCAAGACAGATGTCCAGAGGCATACTTCTCAAATTCCAATGCTCTGGAAAATGTGAATTTGCACTTCACAAGAGACTGGAAACATGCAAATAAAATGTATTTCGAATTGAAGGATCGAATTAACGAAGTTATGGAGATGGGCAGTGTTCCAGCGAACAAACAGAAAGAACACAAGGGATTCAAGGACTGGGTTTCTGGAAGCAGTAGGCGAGATC

Fln Alignment:

sp_v1.1_unigene41084___PKRLSQRFERDLLPVDIFICTADPIKEPPLTLINTVLSALAIDYPVxxxxxxxSDDGGSPLTFYALLEASRFAKIWIPFCDNYSIQDRCPEAYFSNSNALENVNLHFTRDWKHANKMYFELKDRINEVMEMGSVPANKQKEHKGFKDWVSGSSRRD
B8LK55_______________PKRLSQRFGSDLPPVDIFICTADPTKEPPLTVINTVLSALALDYPVxxxxxxxSDDGGSPLTFYALLEASRFAKIWLPFCDDYSIQDRCPEAYFSNADALQSVNLSFTRAWKHVNKMYLELKDRINNVVEMGSVPADKQKEHKGFKDWVSGSTKPD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain