SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40989

Length: 431 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene40989
ACTTTTGTATTGATTCACAGGGATTTTCTACAGATCATGAGATGGCATTGGAACAACTTTTTGGAGAGCACAATGAGAATAGTCGAGATTATGAAGTCTGTCTTAATACTATGGCTTCTCGACTTGCGACAGTTTTTGCATCTCAAAAGGAGTTTCCAGTTGTTAGATTTCGTGCTGCCAGGTCAGCCATGGATGCAACAACAACAACTACCTTTCGGGATTTAATTCCAACAAAACTTGCAGCAGGACTCTGGGATTGTCTTGTCAAGTATAGATCAACAGTACCAAAGTTTCCTCAGACAGAAACTTGTGATCTGCTCATTGTTGACAGATCGATTGATCAAATTGCTCCAGTGATACATGAATGGACATATGATGCAATGTGCCACGACTTACTGAACATGGAAGGCAACAAGTATGTTTATGAGATT

Ace file of the UniGene sp_v1.1_unigene40989 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SNARE-interacting protein KEULE n=4 Tax=Andropogoneae RepID=B6SHD7_MAIZE	-	-	69%
FL-Next	sp=SNARE-interacting protein KEULE; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	snare-interacting protein keule	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%
Blast2go	peripheral to membrane of membrane fraction	GO:0000300	Cellular Component	84%
Blast2go	cytosol	GO:0005829	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sec1-like protein	IPR001619	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C5X3

Fln msg: Distance to subject end: 373 aas, your sequence is shorter than subject: 143 - 666

Fln protein: FCIDSQGFSTDHEMALEQLFGEHNENSRDYEVCLNTMASRLATVFASQKEFPVVRFRAARSAMDATTTTTFRDLIPTKLAAGLWDCLVKYRSTVPKFPQTETCDLLIVDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVYEI

Protein Length: 144

Fln nts: ACTTTTGTATTGATTCACAGGGATTTTCTACAGATCATGAGATGGCATTGGAACAACTTTTTGGAGAGCACAATGAGAATAGTCGAGATTATGAAGTCTGTCTTAATACTATGGCTTCTCGACTTGCGACAGTTTTTGCATCTCAAAAGGAGTTTCCAGTTGTTAGATTTCGTGCTGCCAGGTCAGCCATGGATGCAACAACAACAACTACCTTTCGGGATTTAATTCCAACAAAACTTGCAGCAGGACTCTGGGATTGTCTTGTCAAGTATAGATCAACAGTACCAAAGTTTCCTCAGACAGAAACTTGTGATCTGCTCATTGTTGACAGATCGATTGATCAAATTGCTCCAGTGATACATGAATGGACATATGATGCAATGTGCCACGACTTACTGAACATGGAAGGCAACAAGTATGTTTATGAGATT

Fln Alignment:

sp_v1.1_unigene40989___FCIDSQGFSTDHEMALEQLFGEHNENSRDYEVCLNTMASRLATVFASQKEFPVVRFRAARSAMDATTTTTFRDLIPTKLAAGLWDCLVKYRSTVPKFPQTETCDLLIVDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVYEI
Q9C5X3_______________FAIDSQGFITDHERALEDLFGDE-ETSRKGDACLNVMASRIATVFASLREFPAVRYRAAKS-LDASTMTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQTETCELLILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVHVI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
291	66		33		0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain