SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40978

Length: 391 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene40978
TCAGTATTCTACCTTGGTTCCTACTGACTATAGGTGCCATGGTAGGTGCCATTGTGAGTGGTCGCATTGCAGACTACTTGGGTCGGAAAGGGGCATTGAGGGTGTGTTCAGTCTCATATATCATTGGGTGGCTCATTATATTCTTTTCAAAGGAGGCGTTCCAATTAGACATTGGAAGACTGTTTGTGGGATATGGAGTGGGCCTTACTTCCTTTACTGTTCCAGTCTATATAGCTGAAATAACTCCCAAAAACTTGAGGGGAGTGCTGACAACTACAAATCAGTTATCCATTACCACTGGTACTTTGGTAGTATATTTGCTTGGGATGCTGGTTGAATGGCGCCTTCTTGCCATCATGGGAATTATCCCATGTGTTCTTTTAATATTGGG

Ace file of the UniGene sp_v1.1_unigene40978

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9RSW9_RICCO	-	-	8.0e-39	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	sugar	-	-	0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Blast2go	General substrate transporter	IPR005828	-	78%
Blast2go	Sugar transporter, conserved site	IPR005829	-	78%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	78%
Blast2go	Major facilitator superfamily domain	IPR020846	-	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8F2

Fln msg: Distance to subject end: 285 aas, your sequence is shorter than subject: 129 - 501

Fln protein: SILPWFLLTIGAMVGAIVSGRIADYLGRKGALRVCSVSYIIGWLIIFFSKEAFQLDIGRLFVGYGVGLTSFTVPVYIAEITPKNLRGVLTTTNQLSITTGTLVVYLLGMLVEWRLLAIMGIIPCVLLIL

Protein Length: 130

Fln nts: TCAGTATTCTACCTTGGTTCCTACTGACTATAGGTGCCATGGTAGGTGCCATTGTGAGTGGTCGCATTGCAGACTACTTGGGTCGGAAAGGGGCATTGAGGGTGTGTTCAGTCTCATATATCATTGGGTGGCTCATTATATTCTTTTCAAAGGAGGCGTTCCAATTAGACATTGGAAGACTGTTTGTGGGATATGGAGTGGGCCTTACTTCCTTTACTGTTCCAGTCTATATAGCTGAAATAACTCCCAAAAACTTGAGGGGAGTGCTGACAACTACAAATCAGTTATCCATTACCACTGGTACTTTGGTAGTATATTTGCTTGGGATGCTGGTTGAATGGCGCCTTCTTGCCATCATGGGAATTATCCCATGTGTTCTTTTAATATTGGG

Fln Alignment:

sp_v1.1_unigene40978___LLTIGAMVGAIVSGRIADYLGRKGALRVCSVSYIIGWLIIFFSKEAFQLDIGRLFVGYGVGLTSFTVPVYIAEITPKNLRGVLTTTNQLSITTGTLVVYLLGMLVEWRLLAIMGIIPCVLLIL
D5A8F2_______________LLTIGAMVGAILSGRIADFLGRKGALRVSSASYVIGWLIISLLKDAWLLDIGRLFIGYGVGLTSYTIPVYIAEITPKNLRGGLTTTNQLSITIGILIAYLLGMLVRWRLLAIIGIIPCFLLVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain