SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40962

Length: 357 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene40962
CAGGCTACCTTGATCCAGTGTATTATCAGTGCTATCAGCTGACAGAGAAATCCGATGTTTACAGCTTTGGGGTCGTTTTGGTGGAGATCATCTCTGCCAGATTAGCAGTGGACACAAATCGGAAAACCAGGGAAATCAACCTGGCTGCCATGGCAATAGCTAAGATTCAAGAAGGGGCTTTGCATGAGCTTGTGGATCCGCAGCTGAAAATCGAAAAGAATCATGAGGTGAAGGCCATGGTATGTGCAGTTGCCGAATTAGCGTTCAGATGCCTGGCGTCAGAAAGAGATGACAGACCACACATGAAGCAAGTTGTTGCTGAGCTTGGAGGAAATCAGACATTTGTATGGTGGTAGT

Ace file of the UniGene sp_v1.1_unigene40962

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Wall-associated kinase, putative n=1 Tax=Ricinus communis RepID=B9RSP6_RICCO	-	-	6.0e-31	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	serine threonine protein kinase family protein	-	-	1.18842e-30	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	1.18842e-30	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	1.18842e-30	74%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	1.18842e-30	74%
Blast2go	Protein kinase-like domain	IPR011009	-	1.18842e-30	74%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAR4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 46 aas, atg_distance in limit (1-15): atg_distance = 5, W2: There is no M at the beginning, your sequence is shorter than subject: 118 - 166

Fln protein: GYLDPVYYQCYQLTEKSDVYSFGVVLVEIISARLAVDTNRKTREINLAAMAIAKIQEGALHELVDPQLKIEKNHEVKAMVCAVAELAFRCLASERDDRPHMKQVVAELGGNQTFVWW*

Protein Length: 119

Fln nts: CAGGCTACCTTGATCCAGTGTATTATCAGTGCTATCAGCTGACAGAGAAATCCGATGTTTACAGCTTTGGGGTCGTTTTGGTGGAGATCATCTCTGCCAGATTAGCAGTGGACACAAATCGGAAAACCAGGGAAATCAACCTGGCTGCCATGGCAATAGCTAAGATTCAAGAAGGGGCTTTGCATGAGCTTGTGGATCCGCAGCTGAAAATCGAAAAGAATCATGAGGTGAAGGCCATGGTATGTGCAGTTGCCGAATTAGCGTTCAGATGCCTGGCGTCAGAAAGAGATGACAGACCACACATGAAGCAAGTTGTTGCTGAGCTTGGAGGAAATCAGACATTTGTATGGTGGTAGT

Fln Alignment:

sp_v1.1_unigene40962___GYLDPVYYQCYQLTEKSDVYSFGVVLVEIISARLAVDTNRKTREINLAAMAIAKIQE-GALHELVDPQLKIEKNHEVKAMVCAVAELAFRCLASERDDRPHMKQVVAELGGNQTF
D5AAR4_______________GYAAPEYVATGHLTTRSDVYSFGVVLLELLSGRRTVDKNRPPGEQNLVEWAKPSLNDKRKVYHIMD--TRMEGQYSVKGAYCA-SKLALECLNPESKFRPHMKEVVERLEQLQNY

SNPs (tot: 3)

Position	A %	C %	G %	Probability
120	33	66		0.997453
125	66		33	0.997464
163	66		33	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain