SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40932

Length: 403 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene40932
TTCGACCTCTTGGGCAAAAAACAGAAAAGCCAAGGGCAACGCGTGGGCTTGGCCCGTTCAAGAGCCATAGAAAAGAGGAAGAAGACTCTCTTACAAGAATACAAACAAAGTGGAAAAGCTAATGTTTTCTTGGACAGGCGGTTTGGGGAAAATGATGACACTCTTGAAGATGCAGATAAGGCTATTATTAGATTCCAGCGTGAGCGACAGTCACGGATGCTTAAGAAGGACAAATACACTTTAGCAGATGGAGAAGATGACATTCTTACTCATCATGGTGCTGCTCTATCGACTCTGGATGACTTTGAGGATGAGATTGTTGAAGATGATGATGATGTAGATGACACGATTACCAGGAAGCTGAATTTTGGTGGGGGTGCTGATCAAGACACAATCCCAAATG

Ace file of the UniGene sp_v1.1_unigene40932 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nop14, MGC92141, Nop14-like, c4orf9, cb168, ik:tdsubc_1a2, nol14, sb:cb168, xx:tdsubc_1a2, zgc:92141; NOP14 nucleolar protein homolog (yeast)	-	-	5.0e-16	47%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	62%
Blast2go	nucleolar protein 14	-	-	3.05003e-26	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nop14-like protein	IPR007276	-	3.05003e-26	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9S6T6

Fln msg: Distance to subject end: 758 aas, your sequence is shorter than subject: 134 - 942

Fln protein: FDLLGKKQKSQGQRVGLARSRAIEKRKKTLLQEYKQSGKANVFLDRRFGENDDTLEDADKAIIRFQRERQSRMLKKDKYTLADGEDDILTHHGAALSTLDDFEDEIVEDDDDVDDTITRKLNFGGGADQDTIPN

Protein Length: 135

Fln nts: TTCGACCTCTTGGGCAAAAAACAGAAAAGCCAAGGGCAACGCGTGGGCTTGGCCCGTTCAAGAGCCATAGAAAAGAGGAAGAAGACTCTCTTACAAGAATACAAACAAAGTGGAAAAGCTAATGTTTTCTTGGACAGGCGGTTTGGGGAAAATGATGACACTCTTGAAGATGCAGATAAGGCTATTATTAGATTCCAGCGTGAGCGACAGTCACGGATGCTTAAGAAGGACAAATACACTTTAGCAGATGGAGAAGATGACATTCTTACTCATCATGGTGCTGCTCTATCGACTCTGGATGACTTTGAGGATGAGATTGTTGAAGATGATGATGATGTAGATGACACGATTACCAGGAAGCTGAATTTTGGTGGGGGTGCTGATCAAGACACAATCCCAAATG

Fln Alignment:

sp_v1.1_unigene40932___FDLLGKKQKS-QGQRVGLARSRAIEKRKKTLLQEYKQSGKANVFLDRRFGENDDTLEDADKAIIRFQRERQSRMLKKDKYTLADGED----DILTHHGAALST
A9S6T6_______________FDVLGKKQKGGDAKRVGLARSAAVEKRKKSLLPEYKQRGKTNAFLDSRFGEHDESLGDEDKAILRFQKERMVQMQKKKKFALEDDDDEQPTELLTHGGNALST

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
263	33	66			0.997467
317	66			33	0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain