SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40905

Length: 497 nt

UniGene Fasta

>sp_v1.1_unigene40905
CTGAAGTACCCATTGTATACATTGTTGGTCTTTAATTCACATCAAATTGCACTTCCTATTGCATGGATAATTACCTCGAGTTTTGCAACCCAACAAGCTCACAAATGGATGGCAGCCCTTTGTGATAAAGTTCACTTAAAGGATCCCAAATGGAAGCCATATGCTTTCATGATTGATGATGCAGCCGCAGATATTTCAATAATCAGAGAGCTGTTTCAATGTCGGATTTTGTTATGCCTTTGGCGCATTCGGCGAGCATGGTTGAGGAACATTGTCAAACAGTGTTGCAACATCGATGTGCAACAGGAGATGTTTAGGCGACTTGGTTGCATTTTGTATACAACAAGGAATGGACCTACTGCCATGGATGCAGTGGAAGAATTTATGCAAATATTTGTAGATCAAAATGCTTTCTTGGAGTACTTTAAGACAAAATGGCTGCCTAAAATAGAGATATGGGTCTCTGCGATGAGAACTCTTCCACTGGCAAATCAGGA

Ace file of the UniGene sp_v1.1_unigene40905

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	60%
Blast2go	swim zinc finger family	-	-	7.00649e-45	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	MULE transposase domain	IPR018289	-	7.00649e-45	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RS82

Fln msg: Distance to subject end: 214 aas, your sequence is shorter than subject: 165 - 686

Fln protein: LKYPLYTLLVFNSHQIALPIAWIITSSFATQQAHKWMAALCDKVHLKDPKWKPYAFMIDDAAADISIIRELFQCRILLCLWRIRRAWLRNIVKQCCNIDVQQEMFRRLGCILYTTRNGPTAMDAVEEFMQIFVDQNAFLEYFKTKWLPKIEIWVSAMRTLPLANQ

Protein Length: 166

Fln nts: CTGAAGTACCCATTGTATACATTGTTGGTCTTTAATTCACATCAAATTGCACTTCCTATTGCATGGATAATTACCTCGAGTTTTGCAACCCAACAAGCTCACAAATGGATGGCAGCCCTTTGTGATAAAGTTCACTTAAAGGATCCCAAATGGAAGCCATATGCTTTCATGATTGATGATGCAGCCGCAGATATTTCAATAATCAGAGAGCTGTTTCAATGTCGGATTTTGTTATGCCTTTGGCGCATTCGGCGAGCATGGTTGAGGAACATTGTCAAACAGTGTTGCAACATCGATGTGCAACAGGAGATGTTTAGGCGACTTGGTTGCATTTTGTATACAACAAGGAATGGACCTACTGCCATGGATGCAGTGGAAGAATTTATGCAAATATTTGTAGATCAAAATGCTTTCTTGGAGTACTTTAAGACAAAATGGCTGCCTAAAATAGAGATATGGGTCTCTGCGATGAGAACTCTTCCACTGGCAAATCAGGA

Fln Alignment:

sp_v1.1_unigene40905___LKYPLYTLLVFNSHQIALPIAWIITSSFATQQAHKWMAALCDKVHLKDPKWKPYAFMXXXXXXXXXXXRELFQXXXXXXXXXXXXXXXXNIVKQCCNIDVQQEMFRRLGCILYTTRNGPTAMDAVEEFMQIFVDQNAFLEYFKTKWLPKIEIWVSAMRTLPLA
B9RS82_______________LKYPLCTLLVFDSSQNAIPVAWIITSSFLSQEIHKWFSSLAEKIRTKDPRWRPSAFLVDDPSLDISIIREAFHCRVLLCTWHVRRSWIRSLLKKCCNIDVQREMFKHLGWVLYSTRSAANAADAIEEFMQVYVDQSIFIDYFKRRWLPYIELWVNGIRSLPLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain