SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40877

Length: 469 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene40877
TTCATGATATTTTGACAACATTAAGAAATAATTTGGAGATACCGGTGACATGTAAGATTCGTTTACTCAGATCACCTGAAGATACAATTGAATTGGCACGGAGAATTGAGAAAATGGGTGTTTCTGCTATCGCTGTTCATGGGAGGAAAGTTGCAGATAGGCCAAGGGACCCTGCACAGTGGGATGTGATTGGTCAGGCTGTTTCAGCATTGTCTATTCCTGTCATTGCCAATGGTGATGTTTTTGATTATGCAGATTTCCAGAGGATAAAAGATGCAACAGGTGCATCTTCTGTAATGGTGGCAAGAGGAGCTTTATGGAATGCTTCTATTTTTCGGCCTGAAGGGAAACTTCCTTGGGAAGATGTGAAGAGAGAGTACTTACACAAGTGCTTTTATGGGACAATAGTCCTAAATGTACAAAGCAGACATTGAAGGAGATGATCATACATCATTCTTTTGTTGAGCTT

Ace file of the UniGene sp_v1.1_unigene40877

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	tRNA-dihydrouridine synthase, putative n=1 Tax=Ricinus communis RepID=B9SSD6_RICCO	-	-	80%
FL-Next	sp=tRNA-dihydrouridine synthase 3-like; Arabidopsis thaliana (Mouse-ear cress).	-	-	35%
Blast2go	protein	-	-	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	tRNA-dihydrouridine synthase	IPR001269	-	0.0	84%
Blast2go	Aldolase-type TIM barrel	IPR013785	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9T0J6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 80 aas, your sequence is shorter than subject: 144 - 700

Fln protein: HDILTTLRNNLEIPVTCKIRLLRSPEDTIELARRIEKMGVSAIAVHGRKVADRPRDPAQWDVIGQAVSALSIPVIANGDVFDYADFQRIKDATGASSVMVARGALWNASIFRPEGKLPWEDVKREYLHKCFYGTIVLNVQSRH*

Protein Length: 145

Fln nts: TTCATGATATTTTGACAACATTAAGAAATAATTTGGAGATACCGGTGACATGTAAGATTCGTTTACTCAGATCACCTGAAGATACAATTGAATTGGCACGGAGAATTGAGAAAATGGGTGTTTCTGCTATCGCTGTTCATGGGAGGAAAGTTGCAGATAGGCCAAGGGACCCTGCACAGTGGGATGTGATTGGTCAGGCTGTTTCAGCATTGTCTATTCCTGTCATTGCCAATGGTGATGTTTTTGATTATGCAGATTTCCAGAGGATAAAAGATGCAACAGGTGCATCTTCTGTAATGGTGGCAAGAGGAGCTTTATGGAATGCTTCTATTTTTCGGCCTGAAGGGAAACTTCCTTGGGAAGATGTGAAGAGAGAGTACTTACACAAGTGCTTTTATGGGACAATAGTCCTAAATGTACAAAGCAGACATTGAAGGAGATGATCATACATCATTCTTTTGTTGAGCTT

Fln Alignment:

sp_v1.1_unigene40877___LEIPVTCKIR--LLRSPEDTIELARRIEKMGVSAIAVHGRKVADRPRDPAQWDVIGQAV--SALSIPVIANGDVFDYADFQRIK-DATGASSVMVARGALWNASIF
Q9T0J6_______________VETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRSRQQRYSKSADWDYIYQCTKNATTNLQVIGNGDVYSYLDWNKHKSDCPELSSCMIARGALIKPWIF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain