SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40846

Length: 429 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene40846
ATTCAACTTTCACTTCTACACTTGCCCTTAAGGGATCAGTGGGCTACATTCCTCCAGAATATGGATTGGGTGGGCATATCACAACAAAAGGTGATGTTTATAGCTTTGGAATATTGTTATTGGAGATGCTCACTGGAAAGAAGCCTATTGACAACATGTTTGTGCAAGGAATGAACTTACAGAAATGGGTGGGTAACCATTTTCCAAATCAACTAGAGGAAGTGGTAGACAAGAGTTTATTGAAAGGGGCTAGTACAAGCACTCAAGCAGATAAAGATCTTAGCTGCCTCAATCAATCCTTAAGCATGGGTTTGCTTTGCACAAGAGATTCTCCTGAAGGACGACCTACTATGATGGACATTGTGGGAACACTCGAATCCATTAGAGACACTTTTCAAGGCATTGGTGGCATTCCAAAACTGCAATCAG

Ace file of the UniGene sp_v1.1_unigene40846 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	3.0e-09	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	protein kinase receptor type precursor	-	-	0.0	68%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	68%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	68%
Blast2go	Protein kinase-like domain	IPR011009	-	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW30

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 142 - 247

Fln protein: STFTSTLALKGSVGYIPPEYGLGGHITTKGDVYSFGILLLEMLTGKKPIDNMFVQGMNLQKWVGNHFPNQLEEVVDKSLLKGASTSTQADKDLSCLNQSLSMGLLCTRDSPEGRPTMMDIVGTLESIRDTFQGIGGIPKLQS

Protein Length: 143

Fln nts: ATTCAACTTTCACTTCTACACTTGCCCTTAAGGGATCAGTGGGCTACATTCCTCCAGAATATGGATTGGGTGGGCATATCACAACAAAAGGTGATGTTTATAGCTTTGGAATATTGTTATTGGAGATGCTCACTGGAAAGAAGCCTATTGACAACATGTTTGTGCAAGGAATGAACTTACAGAAATGGGTGGGTAACCATTTTCCAAATCAACTAGAGGAAGTGGTAGACAAGAGTTTATTGAAAGGGGCTAGTACAAGCACTCAAGCAGATAAAGATCTTAGCTGCCTCAATCAATCCTTAAGCATGGGTTTGCTTTGCACAAGAGATTCTCCTGAAGGACGACCTACTATGATGGACATTGTGGGAACACTCGAATCCATTAGAGACACTTTTCAAGGCATTGGTGGCATTCCAAAACTGCAATCAG

Fln Alignment:

sp_v1.1_unigene40846___EYGLGGHITTKGDVYSFGILLLEMLTGKKPIDNMFVQGMNLQKWVGNHFPNQLEEVVDKSLLKGASTSTQADKDLSCLNQSLSMGLLCTRDSPEGRPTMMDIVGTLESIRDTFQGIGGIPKLQS
A9NW30_______________EYGLDGHVTTKGDVYSYGIVLLEMLTGKKPTDNMFVEGMDLQKWVGNSFPNQLGEIVDNSLLRRTTTSNQVDKDLNCLSQSITMGLLCTKDAPKERPTMMDIVGTLQSIRDTFHGVVTIPKFQS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
254	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain