SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40811

Length: 374 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene40811
ATGGGGGAATCAACCAGAAATGGTTGTGGCTCGCCGTTCAGTGCATGGTGTTACAGAAGTATTTGTTAAATGGTGTGGTTTGCATTATGATGAGTGCACTTGGGAACGCATGGATGATCCTGCTATTGCAGAAAATAAGCACTTGCTATCTTACTTTGAAGAATTTGAGACAAAGGCATTTGTTGAGGATGAATCCACTGATGCTTCTGGAGACACTGATTCAGCTGTCAAGAAAAGTCAAAGACCAAGTGAAATTGAGCCACTTACAGAGCAGCCTGGTGAATTGAAGGGAGGTACCCTGTTTCCTCATCAACTAGAAGCATTGAATTGGCTGAGGAAATGCTGGCACAAGAAGAAAATGTTATCCTAGCTGA

Ace file of the UniGene sp_v1.1_unigene40811

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9GVF7_POPTR	-	-	2.0e-28	51%
FL-Next	sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	31%
Blast2go	chromatin remodeling complex subunit	-	-	3.28249e-28	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Chromo domain/shadow	IPR000953	-	3.28249e-28	59%
Blast2go	Chromo domain-like	IPR016197	-	3.28249e-28	59%
Blast2go	Chromo domain	IPR023780	-	3.28249e-28	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9S775

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1087 aas, your sequence is shorter than subject: 123 - 1384

Fln protein: WGNQPEMVVARRSVHGVTEVFVKWCGLHYDECTWERMDDPAIAENKHLLSYFEEFETKAFVEDESTDASGDTDSAVKKSQRPSEIEPLTEQPGELKGGTLFPHQLEALNWLRKCWHKKKMLS*

Protein Length: 124

Fln nts: ATGGGGGAATCAACCAGAAATGGTTGTGGCTCGCCGTTCAGTGCATGGTGTTACAGAAGTATTTGTTAAATGGTGTGGTTTGCATTATGATGAGTGCACTTGGGAACGCATGGATGATCCTGCTATTGCAGAAAATAAGCACTTGCTATCTTACTTTGAAGAATTTGAGACAAAGGCATTTGTTGAGGATGAATCCACTGATGCTTCTGGAGACACTGATTCAGCTGTCAAGAAAAGTCAAAGACCAAGTGAAATTGAGCCACTTACAGAGCAGCCTGGTGAATTGAAGGGAGGTACCCTGTTTCCTCATCAACTAGAAGCATTGAATTGGCTGAGGAAATGCTGGCACAAGAAGAAAATGTTATCCTAGCTGA

Fln Alignment:

sp_v1.1_unigene40811___EMVVARRSVHGVTEVFVKWCGLHYDECTWERMDDPAIAENKHLLSYFEEFETKAFVEDESTDASGDTDSAVKKSQRPSEIEPLTEQPGELKGGTLFPHQLEALNWLRKCWHKK
Q9S775_______________DRILACREEDGELEYLVKYKELSYDECYWESESDISTFQNE--IQRFKDVNSR-------TRRSKDVD----HKRNPRDFQQFDHTPEFLK-GLLHPYQLEGLNFLRFSWSKQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain