SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40733

Length: 539 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene40733
CATGGTCAAATATGTTGCTCGCGCCGGGTCCGAACTGCACAGAGATCTCGCCGAAGAGGTCCGCGCAGCCGTTGAAGCACACGGGGGACTCACCGGCAGGGCTCTGGAGAGCATGGCGCTGGTCCGGTCGACCGCGTACGAAGTGCTGAGGATAGAGCCACCTGTGCCTCTACAGTACGGAAGGGCCAAGAAGGATTTCTTCGTGGAATCCCACGACGGGCGTTATGCGGTAAAAGAGGGAGAAATGCTTTGCGGGTACCAGCCGTTTGCCACCCGGGACCCCGAAGTGTTCACTAGGGCTGAGGAGTTTGTTCCGCGTCGGTTCATGGGTGAGGATGGGCAGAAGATGTTGAAGCACCTGCTCTGGTCTAATGGCCGTGAAACTGATGAAACGTCTGCTGACAACAAGCAGTGTGCGGGGAAGAGAGACGTCGTTGTCAGCATGGCTCACCTTTTTCTGGCGCACTTCTTCCTGCGATACGATTCATTTGCCATAGCACAGTCTTCATCTTCGTCCTCTGTGACCTTTACGATGCTCA

Ace file of the UniGene sp_v1.1_unigene40733

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Allene oxide synthase protein n=1 Tax=Lonicera japonica RepID=A1X873_LONJA	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	allene oxide synthase	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	77%
Blast2go	response to fungus	GO:0009620	Biological Process	77%
Blast2go	response to wounding	GO:0009611	Biological Process	77%
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	77%
Blast2go	allene oxide synthase activity	GO:0009978	Molecular Function	77%
Blast2go	mitochondrion	GO:0005739	Cellular Component	77%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	77%
Blast2go	plastoglobule	GO:0010287	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX03

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 179 - 484

Fln protein: MVKYVARAGSELHRDLAEEVRAAVEAHGGLTGRALESMALVRSTAYEVLRIEPPVPLQYGRAKKDFFVESHDGRYAVKEGEMLCGYQPFATRDPEVFTRAEEFVPRRFMGEDGQKMLKHLLWSNGRETDETSADNKQCAGKRDVVVSMAHLFLAHFFLRYDSFAIAQSSSSSSVTFTML

Protein Length: 180

Fln nts: CATGGTCAAATATGTTGCTCGCGCCGGGTCCGAACTGCACAGAGATCTCGCCGAAGAGGTCCGCGCAGCCGTTGAAGCACACGGGGGACTCACCGGCAGGGCTCTGGAGAGCATGGCGCTGGTCCGGTCGACCGCGTACGAAGTGCTGAGGATAGAGCCACCTGTGCCTCTACAGTACGGAAGGGCCAAGAAGGATTTCTTCGTGGAATCCCACGACGGGCGTTATGCGGTAAAAGAGGGAGAAATGCTTTGCGGGTACCAGCCGTTTGCCACCCGGGACCCCGAAGTGTTCACTAGGGCTGAGGAGTTTGTTCCGCGTCGGTTCATGGGTGAGGATGGGCAGAAGATGTTGAAGCACCTGCTCTGGTCTAATGGCCGTGAAACTGATGAAACGTCTGCTGACAACAAGCAGTGTGCGGGGAAGAGAGACGTCGTTGTCAGCATGGCTCACCTTTTTCTGGCGCACTTCTTCCTGCGATACGATTCATTTGCCATAGCACAGTCTTCATCTTCGTCCTCTGTGACCTTTACGATGCTCA

Fln Alignment:

sp_v1.1_unigene40733___MVKYVARAGSELHRDLAEEVRAAVEAHGGLTGRALESMALVRSTAYEVLRIEPPVPLQYGRAKKDFFVESHDGRYAVKEGEMLCGYQPFATRDPEVFTRAEEFVPRRFMGEDGQKMLKHLLWSNGRETDETSADNKQCAGKRDVVVSMAHLFLAHFFLRYDSFAIAQXXXXXXVTFTML
A9NX03_______________IVKYIALAGNQLQRDLAEEVRGAVRSQGGLNGRALESMALVRSTVYEVLRMAPPVPLQYARAKTDFVVESHDGFYGVKKGELLGGYQPFATKDPKLFDRADEFVPRRFMGQEGEKMLKHVLWSNGRETDETSADNKQCAGK-DIVVMVARLFVAHFFLRYDSYTIDQ--SSSSVTFSTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain