SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40680

Length: 397 nt

UniGene Fasta

>sp_v1.1_unigene40680
GAACAAAAGAGGATCAGGTAGAGGTAATTGCTAATCAGATGAAAGAGCATGGTATGAAACTTGATGTTGTGGTTTTTCGACAGAGAATGCCTGGACAAACAAAATCGGAGTTATTCAGTGAAAATCTTTCCCTTCTAAATAGATTTTCAAGGCAACAGAAGCAGAAGTGATAGTTGTAGAAAGTCCAACTTCATTATTGGGTGCTGTGAAAGCTAGGAACATTTCTCCATTCACCATATTCAGAGGTGACCTGGAACTGACTCCTAATATGAAAATTAAGGTGTGGGTTTATAAGAAGACATATCAAGAAAGGATCCCTTCATTAAAAAAATATTCAGACAAGGCACCTCCAAATGATCCATATGCAACACGAGAAGTAAAGATGGATGTTCAGTAC

Ace file of the UniGene sp_v1.1_unigene40680

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ku P80 DNA helicase, putative; K10885 ATP-dependent DNA helicase 2 subunit 2	-	-	8.0e-31	69%
FL-Next	sp=ATP-dependent DNA helicase 2 subunit KU80; Oryza sativa subsp. japonica (Rice).	-	-	0.0	55%
Blast2go	ku p80 dna	-	-	8.25608e-32	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	double-strand break repair	GO:0006302	Biological Process	8.25608e-32	81%
Blast2go	response to heat	GO:0009408	Biological Process	8.25608e-32	81%
Blast2go	protein binding	GO:0005515	Molecular Function	8.25608e-32	81%
Blast2go	double-stranded DNA binding	GO:0003690	Molecular Function	8.25608e-32	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Spen Paralogue and Orthologue SPOC, C-terminal-like	IPR016194	-	8.25608e-32	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q75IP6

Fln msg: Separated hits, possible frame ERROR between 83 and 164, Distance to subject end: 420 aas, your sequence is shorter than subject: 132 - 688

Fln protein: TKEDQVEVIANQMKEHGMKLDVVVFRxxxxxxxxxxxxxxxxxxxxxxxxxxxxEVIVVESPTSLLGAVKARNISPFTIFRGDLELTPNMKIKVWVYKKTYQERIPSLKKYSDKAPPNDPYATREVKMDVQY

Protein Length: 133

Fln nts: GAACAAAAGAGGATCAGGTAGAGGTAATTGCTAATCAGATGAAAGAGCATGGTATGAAACTTGATGTTGTGGTTTTTCGACAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGAAGTGATAGTTGTAGAAAGTCCAACTTCATTATTGGGTGCTGTGAAAGCTAGGAACATTTCTCCATTCACCATATTCAGAGGTGACCTGGAACTGACTCCTAATATGAAAATTAAGGTGTGGGTTTATAAGAAGACATATCAAGAAAGGATCCCTTCATTAAAAAAATATTCAGACAAGGCACCTCCAAATGATCCATATGCAACACGAGAAGTAAAGATGGATGTTCAGTAC

Fln Alignment:

sp_v1.1_unigene40680___TKEDQVEVIANQMKEHGMKLDVVVFRQxxxxxxxxxxxxxxxxxxxxxxxxxxxEVIVVESPTSLLGAVKARNISPFTIFRGDLELTPNMKIKVWVYKKTYQERIPSLKKYSDKAPPNDPYATREVKMDVQY
Q75IP6_______________TKKDQVDTIADQMKRHEIKMDCIIFRExxxxxxxxxxxxxxxxxxxxxxxxxxxKVVHVDSPTSLLGALRTRNVLPVTVFRGDLEVSSSFKIKVWVYKKTSEEKFPTLKKYSDKAPASDKFASHEVKVDYEY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain