SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40668

Length: 488 nt

UniGene Fasta

>sp_v1.1_unigene40668
CGTCGTGACCTTGGCTTTCACTCAAGATAGCTTTGACATATCAGCAAACCTGATAACTTACAATACTGTAGTGAAGGCAATTTGTGACATGGATGAGCCGGAGTCTGCATTTTCATTTCTAGATGAAATGAAAACATGGCTGTGAACCTAATAATTCTACCTATAATACTATACTCTCAGGCCTGTACAAACAAGGGAAATACAAGGAGGCCGGTGATGTTTTGGAAAAATGTCTTGCTCTGCAGATGTTTTTACATACAACATTAAGATGAGTATCCTCTGTGAATGTAATAAAACCAGTGATGCTGAAAAACTTTTGGATGAAATGGTTTCTAAAGGATTGAAACCGAATATTTGCCATTTCAATACACTGATTGCTGGTTTTTGTAAGGATAATAAGGTGACAGAGGCACAAAGGTTATTTTCTGATATGTCTGGTAAGGGTTGTGATCATAATGCACTGACCTATTGCACCCTCATTCTTTCCC

Ace file of the UniGene sp_v1.1_unigene40668

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide (PPR) repeat-containing protein n=1 Tax=Arabidopsis thaliana RepID=D4I6L6_ARATH	-	-	8.0e-16	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Blast2go	pentatricopeptide repeat protein	-	-	1.42654e-15	46%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	1.42654e-15	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAH0

Fln msg: Distance to subject end: 134 aas, your sequence is shorter than subject: 162 - 486

Fln protein: VVTLAFTQDSFDISANLITYNTVVKAICDMDEPESAFSFLDEMKTWL*T**FYL*YYTLRPVQTREIQGGR*CFGKMSCSADVFTYNIKMSILCECNKTSDAEKLLDEMVSKGLKPNICHFNTLIAGFCKDNKVTEAQRLFSDMSGKGCDHNALTYCTLILS

Protein Length: 163

Fln nts: CGTCGTGACCTTGGCTTTCACTCAAGATAGCTTTGACATATCAGCAAACCTGATAACTTACAATACTGTAGTGAAGGCAATTTGTGACATGGATGAGCCGGAGTCTGCATTTTCATTTCTAGATGAAATGAAAACATGGCTGTGAACCTAATAATTCTACCTATAATACTATACTCTCAGGCCTGTACAAACAAGGGAAATACAAGGAGGCCGGTGATGTTTTGGAAAAATGTCTTGCTCTGCAGATGTTTTTACATACAACATTAAGATGAGTATCCTCTGTGAATGTAATAAAACCAGTGATGCTGAAAAACTTTTGGATGAAATGGTTTCTAAAGGATTGAAACCGAATATTTGCCATTTCAATACACTGATTGCTGGTTTTTGTAAGGATAATAAGGTGACAGAGGCACAAAGGTTATTTTCTGATATGTCTGGTAAGGGTTGTGATCATAATGCACTGACCTATTGCACCCTCATTCTTTCCC

Fln Alignment:

sp_v1.1_unigene40668___FDISANLITYNTVVKAICDMDEPESAFSFLDEMKTWL*T**FYL*YYTLRPVQTREIQGGR*CFGKMSCSADVFTYNIKMSILCECNKTSDAEKLLDEMVSKGLKPNICHFNTLIAGFCKDNKVTEAQRLFSDMSGKGCDHNALTYCTLI
D5AAH0_______________FGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMH-------------------------------KQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain