SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40597

Length: 218 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene40597
CGTGGCAATGGACACAGTTATGTTGTCCCTCAGGCTTGCCAGGGGTCTGGACATTCAGATGTTTTCGAGGGTGTTCGGGCAGTCTCTCTGCATGTCTTTGTGCAGAGGATTGAAGCCATTTGTAGGAAGTGGGCATTTGATCGTTTTGGATGATGAGAGGCGGCCTCTTTCAGCTGAAATATTTGATTATCTTTGCAGTGGCAATGGGCAGGAAGGAG

Ace file of the UniGene sp_v1.1_unigene40597

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	coproporphyrinigen III oxidase, putative (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]	-	-	2.0e-10	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	53%
Blast2go	oxygen-independent coproporphyrinogen iii oxidase family expressed	-	-	4.1926e-12	66%

Source	ECs	Term	Type	e value	Identity
AutoFact	Coproporphyrinogen dehydrogenase.	EC:1.3.99.22	-	2.0e-10	50%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Porphyrin and chlorophyll metabolism	00860		2.0e-10	50%
AutoFact	Biosynthesis of secondary metabolites	01110		2.0e-10	50%

Source	InterPros	Term	Type	e value	Identity
Blast2go	HemN, C-terminal domain	IPR010723	-	4.1926e-12	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GSF6

Fln msg: Distance to subject end: 30 aas, your sequence is shorter than subject: 72 - 473

Fln protein: VAMDTVMLSLRLARGLDIQMFSRVFGQSLCMSLCRGLKPFVGSGHLIVLDDERRPLSAEIFDYLCSGNGQEG

Protein Length: 73

Fln nts: CGTGGCAATGGACACAGTTATGTTGTCCCTCAGGCTTGCCAGGGGTCTGGACATTCAGATGTTTTCGAGGGTGTTCGGGCAGTCTCTCTGCATGTCTTTGTGCAGAGGATTGAAGCCATTTGTAGGAAGTGGGCATTTGATCGTTTTGGATGATGAGAGGCGGCCTCTTTCAGCTGAAATATTTGATTATCTTTGCAGTGGCAATGGGCAGGAAGGAG

Fln Alignment:

sp_v1.1_unigene40597___VAMDTVMLSLRLARGLDIQMFSRVFGQSLCMSLCRGLKPFVGSGHLIVLDDERRPLSAEIFDYLCS
F6GSF6_______________VAMDVVMLSLRTARGLDLKSFRNSFGSSFVASLCMAYRPYVKSGHVVCLDEQRRPVTSDEFSSLLS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
32	75	25			0.996473
34			75	25	0.996473
36			25	75	0.996473
39	25	75			0.996473
41	75	25			0.996473
42			75	25	0.996473
43			75	25	0.996473
51	75			25	0.996473
54		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain