SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40524

Length: 462 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene40524
CGTCGTTAGCCGTGTAAGCAGTCGTTTCAATGTCTCAAGGAGTGGTATTGCTGGTGAACAATTTATCAAGAAGATTCGGGAAGTACGAGCATCAAAGAGATACAAGGCTGTAATTTTACGCATTGACAGCCCTGGTGGTGATGCTCTAGCCTCAGATTTAATGTGGAGGGAAATCAGGTTATTAGCTGCTGAAAAGCCTGTGGTTGCATCCATGGGTGATGTGGCTGCAAGTGGAGGCTATTACATGGCAATGGCAGCAGGAGTCATTGTTTCAGAGAGTCTTACATTGACTGGTTCGATTGGGGGTGTGACAGGTGAACATAATCTCTTAAGTTTCTATCCCAGTGATATATCATTAGTTTCAGTTTGAGAAGAGCATTTATAGATATTGACTAATACTATGAGTTAGATCCACGATCTTCAGTTTCAATTAAATTGTTTGCTTTCATTTTTGGTAAACCC

Ace file of the UniGene sp_v1.1_unigene40524

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to SPPA (signal peptide peptidase); protease IV/ serine-type endopeptidase n=1 Tax=Vitis vinifera RepID=UPI000198502A	-	-	2.0e-28	68%
FL-Next	sp=DNA-directed RNA polymerase; Vitis vinifera (Grape).	-	-	0.0	80%
Blast2go	sppa (signal peptide peptidase) protease iv serine-type endopeptidase	-	-	3.29119e-28	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	3.29119e-28	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to light intensity	GO:0009642	Biological Process	3.29119e-28	83%
Blast2go	proteolysis	GO:0006508	Biological Process	3.29119e-28	83%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	3.29119e-28	83%
Blast2go	chloroplast photosystem II	GO:0030095	Cellular Component	3.29119e-28	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S49	IPR002142	-	3.29119e-28	83%
Blast2go	Peptidase S14/S49	IPR023562	-	3.29119e-28	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SIQ7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 139 aas, your sequence is shorter than subject: 123 - 425

Fln protein: VVSRVSSRFNVSRSGIAGEQFIKKIREVRASKRYKAVILRIDSPGGDALASDLMWREIRLLAAEKPVVASMGDVAASGGYYMAMAAGVIVSESLTLTGSIGGVTGEHNLLSFYPSDISLVSV*

Protein Length: 124

Fln nts: CGTCGTTAGCCGTGTAAGCAGTCGTTTCAATGTCTCAAGGAGTGGTATTGCTGGTGAACAATTTATCAAGAAGATTCGGGAAGTACGAGCATCAAAGAGATACAAGGCTGTAATTTTACGCATTGACAGCCCTGGTGGTGATGCTCTAGCCTCAGATTTAATGTGGAGGGAAATCAGGTTATTAGCTGCTGAAAAGCCTGTGGTTGCATCCATGGGTGATGTGGCTGCAAGTGGAGGCTATTACATGGCAATGGCAGCAGGAGTCATTGTTTCAGAGAGTCTTACATTGACTGGTTCGATTGGGGGTGTGACAGGTGAACATAATCTCTTAAGTTTCTATCCCAGTGATATATCATTAGTTTCAGTTTGAGAAGAGCATTTATAGATATTGACTAATACTATGAGTTAGATCCACGATCTTCAGTTTCAATTAAATTGTTTGCTTTCATTTTTGGTAAACCC

Fln Alignment:

sp_v1.1_unigene40524___GIAGEQFIKKIREVRASKRYKAVILRIDSPGGDALASDLMWREIRLLAAEKPVVASMGDVXXXXXXXXXXXXXVIVSESLTLTGSIGGVTGEHNLLSFY
D7SIQ7_______________GITSEQFIEKIRSVRDSKRYKAVIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGTIVAENLTLTGSIGVVTGKFNLGTLY

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
22		25	75		0.996483
298		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain