SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40513

Length: 1263 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene40513

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	arginine serine-rich splicing	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	69%
Blast2go	protein binding	GO:0005515	Molecular Function	69%
Blast2go	nuclear speck	GO:0016607	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	69%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRJ0

Fln msg: STOP codon was not found. Distance to subject end: 12 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 246 - 299

Fln protein: MEDERDAEDAIRGLDNTEFGRQRRRLTVEWTKHADRGFRRYEDGRRSDTGSKPTKTLFVINFDPYNTRVRDLERHFGPYGNLVYVRIRRNFAFVRYESQEEATKALDSTHMSKVLDRVITVEYAQREDSDRRGGYSSPIRSGRYGRAADGLDRDQSASPMYRRRPVRDSPDYGRAPSPIYARRPQQYSPDYGRAPSPIYARRPERHNYDSGGAASPVYASHPRRNSPDYDRVASPVHERYRSRSPV

Protein Length: 247

Fln nts: CTTGTTCAGCCAGTCTCAAGCATGTCAAGAGATAAAATCCATGACACATCACTGCCGTGAGCTTGGGTCAGTCAATTTCATCCCTCTCATGCCATTTTAAAGTGTTCAGACAGGCTCAAGCATGTCAATGGATAAAATCCATGAGACTTCTACAATCAGAATGGATCATGTTACTTTCATTCCTCATGCCATGTTAAGTGTTCGGCCAGGCTCAAGCATGTCAAGAGATAAAGTCCATGACACATTACTACAATCAGAATGAAGCATGTTACTTTCATCATTCTCATGCCATGTTAAATGTTCAGTCAGGCTCAAGCATATCAAGAGATAAAAATCCATGACACATCACTGCATTCAGAATGGAGCATAACTGGTGAAGGCACTTATCCGATTGATAGCCCTACAGACACTTATGGATTAGACTTACCTGATACCATTTAGTACAACAGGCAACGTTTTTCCTGATGTCCCCTAATGCAGCAAGTCATTTACAGCAATAATTAACAGGTTATGCTTTCATCTAC_-_ATGGAAGATGAGCGTGATGCAGAGGATGCAATCCGAGGGCTTGACAATACAGAATTTGGCAGACAAAGACGGAGGCTAACTGTAGAGTGGACAAAGCATGCTGACCGAGGTTTTCGCCGATATGAAGATGGCAGGAGGTCTGATACAGGTTCGAAGCCAACGAAGACTTTATTTGTGATAAACTTTGACCCATACAATACCAGAGTCAGGGACCTTGAAAGGCATTTTGGGCCTTATGGTAATCTGGTGTACGTAAGAATCAGAAGGAATTTTGCATTTGTCCGGTATGAATCGCAAGAAGAAGCAACTAAAGCTCTGGATTCCACCCATATGAGCAAAGTGTTAGATAGGGTGATCACAGTTGAATATGCTCAACGTGAGGATAGTGATAGAAGAGGCGGATATTCCAGCCCCATTCGAAGTGGTCGGTATGGCAGAGCCGCAGATGGTCTTGACCGTGATCAGTCTGCAAGTCCTATGTATCGTAGGCGTCCAGTGAGGGACAGTCCTGACTATGGTAGGGCTCCAAGTCCTATCTATGCAAGGCGCCCACAGCAATACAGTCCTGACTATGGTAGGGCCCCAAGCCCTATTTATGCAAGGCGCCCTGAGAGACACAACTATGATTCTGGCGGGGCTGCAAGTCCTGTTTATGCCAGCCATCCACGCAGAAATAGTCCAGATTATGACAGAGTTGCAAGTCCCGTTCATGAACGATACCGCAGTAGGTCACCGGTGA

Fln Alignment:

sp_v1.1_unigene40513___TGYAFIYMEDERDAEDAIRGLDNTEFGRQRRRLTVEWTKHADRGFRRYEDGRRSDTGSKPTKTLFVINFDPYNTRVRDLERHFGPYGNLVYVRIRRNFAFVRYESQEEATKALDSTHMSKVLDRVITVEYAQREDSDRRGGYSSPIRSGRYGRAADGLDRDQSASPMYRRRPVRDSPDYGRAPSPIYARRPQQYSPDYGRAPSPIYARRPERHNYDSGGAASPVYASHPRRNSPDYDRVASPVHERYRSRSPV
A9NRJ0_______________SGYAFIYMEDERDAEDAIRGLDNTDFGRQRRRLTVEWTKHADRGFRRFEDGRRSDAGLNPTKTLFVINFDPYSTKVRDLERHFEPYGKLIYVRIRRNFAFVQYESQEDATKALESTHMSKMLDRVITVEYAQGEDSDRRGGYSSPIQSRRYGKAADVRDRDRSASPRYGRRPVRGSPDYGRARSPIYARSSERHSHDYGRAPSPIYARHPERHSHDYGRAASPVYVSRPRRDIPDYGRVASPVHERYRSRSPV

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
277	20			40	1.0
279			20	80	0.995493
280			20	80	0.995493
281		80	20		0.995493
287		20		80	0.995493
311		50		50	1.0
651	83			16	0.994512
654		16		83	0.994512
655	83		16		0.994512
661	71	28			1.0
662		14	85		0.993533
663	71			28	1.0
664		14		85	0.993533
666			85	14	0.993533
667		85	14		0.993533
668	85			14	0.993533
669		14	85		0.993533
670		14	71	14	0.984337
671	71	14		14	0.984337
672	14		71	14	0.984337
673		14	85		0.993533
674			14	85	0.993533
676	14			85	0.993533
681		14		85	0.993533
682	71		14	14	0.984337
684	85			14	0.993533
685			85	14	0.993533
1045			83	16	0.994512
1051			16	83	0.994512
1058			14	85	0.993533
1062		16	83		0.994512
1063	16		83		0.994512
1068	16		83		0.994512
1092		66		33	1.0
1139	14			85	0.993533
1141	85		14		0.993533
1142			14	85	0.993533
1217	57		42		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain