SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40376

Length: 349 nt

UniGene Fasta

>sp_v1.1_unigene40376
TTTGTGGTGGGAGTTCCTATCCAAGGGAGTGGGACTACGGACGGTTTCGACAGATTGCTGATAAGTGTGGAGCAGTTTTAATGTGTGATATGGCTCATATTAGTGGCCTTGTTGCGGCCGAGGAATGTTCAAGTCCATTTGATTGCTGTGACATTATCACATCAACAACTCACAAGAGCTTAAGGGGTCCAAGGGGTGGAATGATCTTCTATCGAAAAGGATCTAAACCACGAAAGCGGGGTACATCTCTTTATCAGGGAGACGATAATGGACATTATGACTTTGAGGAAAAGATAAATTTTGCAGTTTTCCCATCATTGCAAGGTGGGCCCCATAATAACCACATTGC

Ace file of the UniGene sp_v1.1_unigene40376

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine hydroxymethyltransferase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SZT0_VITVI	-	-	86%
FL-Next	sp=Serine hydroxymethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	serine hydroxymethyltransferase	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	87%

Source	InterPros	Term	Type	Identity
Blast2go	Serine hydroxymethyltransferase	IPR001085	-	87%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	87%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	87%
Blast2go	Serine hydroxymethyltransferase, pyridoxal phosphate binding site	IPR019798	-	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLP6

Fln msg: Distance to subject end: 173 aas, your sequence is shorter than subject: 115 - 470

Fln protein: CGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLVAAEECSSPFDCCDIITSTTHKSLRGPRGGMIFYRKGSKPRKRGTSLYQGDDNGHYDFEEKINFAVFPSLQGGPHNNHI

Protein Length: 116

Fln nts: TTTGTGGTGGGAGTTCCTATCCAAGGGAGTGGGACTACGGACGGTTTCGACAGATTGCTGATAAGTGTGGAGCAGTTTTAATGTGTGATATGGCTCATATTAGTGGCCTTGTTGCGGCCGAGGAATGTTCAAGTCCATTTGATTGCTGTGACATTATCACATCAACAACTCACAAGAGCTTAAGGGGTCCAAGGGGTGGAATGATCTTCTATCGAAAAGGATCTAAACCACGAAAGCGGGGTACATCTCTTTATCAGGGAGACGATAATGGACATTATGACTTTGAGGAAAAGATAAATTTTGCAGTTTTCCCATCATTGCAAGGTGGGCCCCATAATAACCACATTGC

Fln Alignment:

sp_v1.1_unigene40376___CGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLVAAEECSSPFDCCDIITSTTHKSLRGPRGGMIFYRKGSKPRKRGTSLYQGDDNGHYDFEEKINFAVFPSLQGGPHNNHI
B8LLP6_______________CGGSAYPRDWDYARFRSIADKCGAMLLCDMAHISGLVAAQEAGNPFDYCDLVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQ-----PEGALYDYEDRVNFSVFPSLQGGPHNHQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain