SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40368

Length: 467 nt

UniGene Fasta

>sp_v1.1_unigene40368
CTTCAACATCTCTACATCGTCGGATCCCGCGAATTGAAAGAGTTGCCAAGTTTGCAACCGTTGATATCATTGGAACTGTTGTGGGTTGAAGATTGTCATGAGATGAAGGGCATACAAGGGTTGTGGCAGCTTACAAAGTTGATAGAATTACATGTTGAAGAATGCCATGAGATACAAGAGCTTTCTGGTGTGGAACAATTGATGTCATTAGAGAGGCTTTATGTTAGCAGCTGTCCGAACTAAAGTGGGTGACAGGAGTATTGGAGCAGCTGCAGCAGCGGCTGGGGGAAGAATTCACAGTGGAAAGTGAAGATGACGAAGCCAAATGCATGGACAGGGATGAAGATGATTGGCCACTATGACTAATTCAGGGTTGAGTAGCAGGTAAATTTCACGAAGGCTTTTGTACCAGGTTCACGAAGGCTTTTGACCAGGTAACTTCAGAGAAAATAATATTAAAATCTGTA

Ace file of the UniGene sp_v1.1_unigene40368

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/P-loop/LRR n=1 Tax=Pinus taeda RepID=Q8L8J0_PINTA	-	-	3.0e-10	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	tir-nbs-lrr protein	-	-	1.02332e-13	67%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A987

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 20 aas, your sequence is shorter than subject: 81 - 158

Fln protein: LQHLYIVGSRELKELPSLQPLISLELLWVEDCHEMKGIQGLWQLTKLIELHVEECHEIQELSGVEQLMSLERLYVSSCPN*

Protein Length: 82

Fln nts: CTTCAACATCTCTACATCGTCGGATCCCGCGAATTGAAAGAGTTGCCAAGTTTGCAACCGTTGATATCATTGGAACTGTTGTGGGTTGAAGATTGTCATGAGATGAAGGGCATACAAGGGTTGTGGCAGCTTACAAAGTTGATAGAATTACATGTTGAAGAATGCCATGAGATACAAGAGCTTTCTGGTGTGGAACAATTGATGTCATTAGAGAGGCTTTATGTTAGCAGCTGTCCGAACTAA___AGTGGGTGACAGGAGTATTGGAGCAGCTGCAGCAGCGGCTGGGGGAAGAATTCACAGTGGAAAGTGAAGATGACGAAGCCAAATGCATGGACAGGGATGAAGATGATTGGCCACTATGACTAATTCAGGGTTGAGTAGCAGGTAAATTTCACGAAGGCTTTTGTACCAGGTTCACGAAGGCTTTTGACCAGGTAACTTCAGAGAAAATAATATTAAAATCTGTA

Fln Alignment:

sp_v1.1_unigene40368___LQHLYIVGSRELKELPSLQPLISLELLWVEDCHEMKGIQGLWQLTKLIELHVEECHEIQELSGVEQLMSLERLYVSSCP
D5A987_______________LEILKIQSSEELEELPSMETLVSLRGLWAYGCVKLKRIKGLALLTKLRVLDVKNCSELKELEGVEHCISLQRLYASGCP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain