SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40350

Length: 369 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene40350
AGTCGTATGTTCCAGAGAATGCAAATGGTATCAGCATAGACAACAATAATGGGGATATCAGACAAGCTATTTGTCGACTTGTCTTTTTGGAAAAAGTGGCAAGAGGAGGTGTCATGCTTGCTCGGTCACTTCGCCATTACATTCATGCAAATCTTCACACTTGGGTCGTTGTGAAGGAATGCACCTGGCCAATCACTAAGCCTCCAGCATTATTATTATCTCCTGTTTATTTTAGGCCATTCCAAAACAATAAATCTCATAAAGAAAATGATTCAGATGCTGTGGACAGGAAGGAAAATCTGATTGAAAGTGAAAATACTAACAAGGAATTTGATTCATCCGTCAAAGGGGGANAGAACATTGATTGGA

Ace file of the UniGene sp_v1.1_unigene40350

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxisome biogenesis factor, putative (EC:3.6.4.3); K13338 peroxin-1	-	-	2.0e-09	42%
FL-Next	sp=Peroxisome biogenesis protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%
Blast2go	unnamed protein product [Vitis vinifera]	-	-	8.15478e-11	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FNP1

Fln msg: Distance to subject end: 734 aas, your sequence is shorter than subject: 122 - 1130

Fln protein: SYVPENANGISIDNNNGDIRQAICRLVFLEKVARGGVMLARSLRHYIHANLHTWVVVKECTWPITKPPALLLSPVYFRPFQNNKSHKENDSDAVDRKENLIESENTNKEFDSSVKGGKNIDW

Protein Length: 123

Fln nts: AGTCGTATGTTCCAGAGAATGCAAATGGTATCAGCATAGACAACAATAATGGGGATATCAGACAAGCTATTTGTCGACTTGTCTTTTTGGAAAAAGTGGCAAGAGGAGGTGTCATGCTTGCTCGGTCACTTCGCCATTACATTCATGCAAATCTTCACACTTGGGTCGTTGTGAAGGAATGCACCTGGCCAATCACTAAGCCTCCAGCATTATTATTATCTCCTGTTTATTTTAGGCCATTCCAAAACAATAAATCTCATAAAGAAAATGATTCAGATGCTGTGGACAGGAAGGAAAATCTGATTGAAAGTGAAAATACTAACAAGGAATTTGATTCATCCGTCAAAGGGGGAaAGAACATTGATTGGA

Fln Alignment:

sp_v1.1_unigene40350___RQAICRLVFLEKVARGGVMLARSLRHYIHANLHTWVVVKECTWPITKP-PALLLSPVYFRPFQNNK
Q9FNP1_______________RQAILRLVFSDLAAKGHLMMVESLRLYLGAGLHSWVYLRGCNVNEDKEIPALSLSPCVFKISENEK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
170	33		66		0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain