SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40327

Length: 445 nt

UniGene Fasta

>sp_v1.1_unigene40327
CACAGGTGCATAAATTTCCCATTAAACCGTTCAGATTCAATTGATTCGTACTCCCCGAACTCTGCGACATTTTCCCTCTGTCGGCTTCAACAACAGACATGGTATCATCGATATCCCCGCATACAAAAACCCACCACGAAGCTCTGTTGGATATCTCAGAAGAACCTGCTCATTCTTCTCCGTTTTCAGAGGTTTGAGGCTCTTCCCACCCTCCATCAAATTCATTATCTGGAACGAGTTCTGCGAGAGATTTTCCTTCTATGGCCTTAAGGCAATCCTCGCCTTATTCCTCTCAGAGCGCCTCGGTCTCTCTCAAGTTCGATCAACAGAAATGTTTCATCTCTTCACAATGACGTGCTATGCAAGTCCAATGCTGGGAGCAGTGATCAGCGACTCCCTCCTGGGAAAATTTAGAACAATATTGTATCTATCTCTTCTCTATGCA

Ace file of the UniGene sp_v1.1_unigene40327

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	oligopeptide transporter, putative	-	-	1.0e-21	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	isoform c	-	-	1.16491e-25	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	proton-dependent oligopeptide secondary active transmembrane transporter activity	GO:0005427	Molecular Function	1.16491e-25	78%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	1.16491e-25	78%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: Distance to subject end: 462 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 140 - 594

Fln protein: TVQIQLIRTPRTLRHFPSVGFNNRHGIIDIPAYKNPPRSSVGYLRRTCSFFSVFRGLRLFPPSIKFIIWNEFCERFSFYGLKAILALFLSERLGLSQVRSTEMFHLFTMTCYASPMLGAVISDSLLGKFRTILYLSLLYA

Protein Length: 141

Fln nts: CACAGGTGCATAAATTTCCCATTAAACCGTTCAGATTCAATTGATTCGTACTCCCCGAACTCTGCGACATTTTCCCTCTGTCGGCTTCAACAACAGACATGGTATCATCGATATCCCCGCATACAAAAACCCACCACGAAGCTCTGTTGGATATCTCAGAAGAACCTGCTCATTCTTCTCCGTTTTCAGAGGTTTGAGGCTCTTCCCACCCTCCATCAAATTCATTATCTGGAACGAGTTCTGCGAGAGATTTTCCTTCTATGGCCTTAAGGCAATCCTCGCCTTATTCCTCTCAGAGCGCCTCGGTCTCTCTCAAGTTCGATCAACAGAAATGTTTCATCTCTTCACAATGACGTGCTATGCAAGTCCAATGCTGGGAGCAGTGATCAGCGACTCCCTCCTGGGAAAATTTAGAACAATATTGTATCTATCTCTTCTCTATGCA

Fln Alignment:

sp_v1.1_unigene40327___FIIWNEFCERFSFYGLKAILALFLSERLGLSQVRSTEMFHLFTMTCYASPMLGAVISDSLLGKFRTILYLSLLY
A9NVR2_______________FILGNECCERLAYYGINTNLVTYLTKRLHQGNAAAAKSVTTWAGTCYLTPLFGAVLADAYWGRYWTIAAFSTIY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain