SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40214

Length: 313 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene40214
AAAAACAGAAGACAGTTTTGCTAACTGAGGAAGGATATGAGGATGCTGAAGAAATTTTGAGTGTAAAAGATCTATATGATCCTCGAGAACAATGGGCTTCATTTGTATTAAATGCCATAAAAGCAAAGGAATTGTTTCTGAGAGATGTGAATTACATTGTTCGTGGCAAGGAGGCTCTTATTGTGGATGAATTTACTGGCCGTGTCATGCAGGGAAGAAGATGGAGTGATGGCTTACATCAGGCAGTTGAAGCAAAGGAAGGTTTACCGATTCAGAATGAGACTGTTACACTGGCTTCAATAAGTTATCAAAA

Ace file of the UniGene sp_v1.1_unigene40214 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein translocase subunit secA n=1 Tax=Ricinus communis RepID=B9RN40_RICCO	-	-	95%
FL-Next	sp=Protein translocase subunit SecA, chloroplastic; Pisum sativum (Garden pea).	-	-	93%
Blast2go	protein translocase subunit seca chloroplast precursor	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	response to absence of light	GO:0009646	Biological Process	93%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	93%
Blast2go	regulation of photosynthesis	GO:0010109	Biological Process	93%
Blast2go	chloroplast organization	GO:0009658	Biological Process	93%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	93%
Blast2go	binding	GO:0005488	Molecular Function	93%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	93%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Blast2go	SecA DEAD-like, N-terminal	IPR011115	-	93%
Blast2go	SecA preprotein, cross-linking domain	IPR011130	-	93%
Blast2go	SecA motor DEAD	IPR014018	-	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q41062

Fln msg: Distance to subject end: 589 aas, your sequence is shorter than subject: 103 - 1011

Fln protein: KQKTVLLTEEGYEDAEEILSVKDLYDPREQWASFVLNAIKAKELFLRDVNYIVRGKEALIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNETVTLASISYQ

Protein Length: 104

Fln nts: AAAAACAGAAGACAGTTTTGCTAACTGAGGAAGGATATGAGGATGCTGAAGAAATTTTGAGTGTAAAAGATCTATATGATCCTCGAGAACAATGGGCTTCATTTGTATTAAATGCCATAAAAGCAAAGGAATTGTTTCTGAGAGATGTGAATTACATTGTTCGTGGCAAGGAGGCTCTTATTGTGGATGAATTTACTGGCCGTGTCATGCAGGGAAGAAGATGGAGTGATGGCTTACATCAGGCAGTTGAAGCAAAGGAAGGTTTACCGATTCAGAATGAGACTGTTACACTGGCTTCAATAAGTTATCAAAA

Fln Alignment:

sp_v1.1_unigene40214___KQKTVLLTEEGYEDAEEILSVKDLYDPREQWASFVLNAIKAKELFLRDVNYIVRGKEALIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNETVTLASISYQ
Q41062_______________KQKSVLLSEQGYEDAEEILAVKDLYDPREQWASFVINAIKAKELFLRDVNYIIRGKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNETVTLASISYQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain