SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40154

Length: 311 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene40154
TATGATGCTAAGAAGGTTGCAGACTATTGCCAAAAGGAGGTGAAATCTAGATGTTTAAGATCCTTGAAATTGGTAAAAGTAAAGTGCCGTGTACCCGGAAATTAGCTAAAGATATGCTGCTGTTTTGGAAACTCGTGGACAAGGAACAGGCTGAGATAAGGAAAAAGGAAGACAGAGAGGCAGCAGAAGTCTTAAAGCATGAAGAAAAACTTAGAGAAGCAAAACAACAACAACAGAGGCTGAACTTTTTACTCTCGCAGACAGAGCTCTATAGTCATTTTATGCGGAACAAGACAAATTCTCAACCTATC

Ace file of the UniGene sp_v1.1_unigene40154 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T6H9_RICCO	-	-	9.0e-29	79%
FL-Next	sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Blast2go	chromatin remodeling complex subunit	-	-	1.69098e-28	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA binding domain, INO80	IPR020838	-	1.69098e-28	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8RXS6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1029 aas, your sequence is shorter than subject: 103 - 1507

Fln protein: *C*EGCRLLPKGGEI*MFKILEIGKSKVPCTRKLAKDMLLFWKLVDKEQAEIRKKEDREAAEVLKHEEKLREAKQQQQRLNFLLSQTELYSHFMRNKTNSQPI

Protein Length: 104

Fln nts: TATGATGCTAAGAAGGTTGCAGACTATTGCCAAAAGGAGGTGAAATCTAGATGTTTAAGATCCTTGAAATTGGTAAAAGTAAAGTGCCGTGTACCCGGAAATTAGCTAAAGATATGCTGCTGTTTTGGAAACTCGTGGACAAGGAACAGGCTGAGATAAGGAAAAAGGAAGACAGAGAGGCAGCAGAAGTCTTAAAGCATGAAGAAAAACTTAGAGAAGCAAAACAACAACAACAGAGGCTGAACTTTTTACTCTCGCAGACAGAGCTCTATAGTCATTTTATGCGGAACAAGACAAATTCTCAACCTATC

Fln Alignment:

sp_v1.1_unigene40154___LEIGKS-KVPCT-----RKLAKDMLLFWKLVDKEQAEIRKKEDREAAEVLKHEEKLREAKQQQQRLNFLLSQTELYSHFMRNKTNSQP
Q8RXS6_______________MKVGRSYKIPRTAPIRTRKISRDMLLFWKRYDKQMAEERKKQEKEAAEAFKREQEQRESKRQQQRLNFLIKQTELYSHFMQNKTDSNP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain