SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40131

Length: 332 nt

UniGene Fasta

>sp_v1.1_unigene40131
ATGGGGGCGGCATTCATTTTCACTGGTAGAGATGGGGAAGGGGTAATTGATTGATTATGGGTGGGGAGGAGTGGTAGTTATTGTTATAACTTCTCAGGTGGGGTGATAGCTCCAGAGGTTTGCGTATATTCATGAAATTGGGCAGGCATTAGGTAGGCAGCAACAGCCATGTCACAGACCAACAACTGGGAGGCAGATAAAATGCTGGACGTGTACATTTATGATTATCTGGTGAAGAGGAATTTACAGAACTCTGCCAAGGCCTTCAGGCAGAGGGCAAAGTCTCTTCTGAGCCAGTTGCCATTGATGCTCCTGGAGGCTTTTTGTAAGAT

Ace file of the UniGene sp_v1.1_unigene40131

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LisH domain containing protein	-	-	4.0e-06	44%
FL-Next	sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	71%
Blast2go	protein	-	-	1.48953e-14	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	flower development	GO:0009908	Biological Process	1.48953e-14	84%
Blast2go		GO:0016481	Biological Process	1.48953e-14	84%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	1.48953e-14	84%
Blast2go	nucleus	GO:0005634	Cellular Component	1.48953e-14	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	LisH dimerisation motif	IPR006594	-	1.48953e-14	84%
Blast2go	Sequence-specific single-strand DNA-binding protein	IPR008116	-	1.48953e-14	84%
Blast2go	LisH dimerisation motif, subgroup	IPR013720	-	1.48953e-14	84%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9FUY2

Fln msg: Overlapping hits, possible frame ERROR between 282 and 258, Unexpected STOP codon at 3' end. Distance to subject end: 877 aas, your sequence is shorter than subject: 54 - 931

Fln protein: MSQTNNWEADKMLDVYIYDYLVKRNLQNSxxxxxxxxxxSSEPVAIDAPGGFL*

Protein Length: 55

Fln nts: ATGGGGGCGGCATTCATTTTCACTGGTAGAGATGGGGAAGGGGTAATTGATTGATTATGGGTGGGGAGGAGTGGTAGTTATTGTTATAACTTCTCAGGTGGGGTGATAGCTCCAGAGGTTTGCGTATATTCATGAAATTGGGCAGGCATTAGGTAGGCAGCAACAGCC_-_ATGTCACAGACCAACAACTGGGAGGCAGATAAAATGCTGGACGTGTACATTTATGATTATCTGGTGAAGAGGAATTTACAGAACTCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCTTCTGAGCCAGTTGCCATTGATGCTCCTGGAGGCTTTTTGTAAGAT

Fln Alignment:

sp_v1.1_unigene40131___MSQTNNWEADKMLDVYIYDYLVKRNLQNSAxxxxxxxxVSSEPVAIDAPGGFL
Q9FUY2_______________MSQTN-WEADKMLDVYIHDYLVKRDLKATAxxxxxxxxVSSDPVAIDAPGGFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain