SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40126

Length: 449 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene40126
CATGCACTGATCTGGCAATGTGGGTATTTTGTCCATTCAATGGCCCAGGGACCCTCAAGGCTGAGGTGTTCAATATACCTCTTGGTAAAATAGGAGAGCATGTTGGGGATTGGGAGCATTTCACTCTTAGGTTCAACAACTTCACAGGTGAGTTATGGAAAGTTTATTTGTCTCAGCACAGTGCTGGCAAATGGGTCAGTGCCTCAGATCTGCAATACGTTGCAGGGAGCAATAGGGCAGTTATCTATTCTTCCAAGGATGGCCATGCAAATTTTCCTGCTGAAGGGGACTTCCTTCAAGGGAATACAGAGCTTGGAATTGGGATAAGGAATGATGCAGCCAAGAGCAAGTATTTTGTTGATACAAGCGGCAAATACCAGATTGTTCAGCAGAATATTGAGTAAGGATGCGTCCACAAGAGCCTCCATGGCTGCAATACATGAGGAAAT

Ace file of the UniGene sp_v1.1_unigene40126 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF946 domain containing protein	-	-	66%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	66%
Blast2go	uncharacterized protein	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Vacuolar protein sorting-associated protein 62	IPR009291	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9I5Q1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 60 aas, your sequence is shorter than subject: 134 - 573

Fln protein: CTDLAMWVFCPFNGPGTLKAEVFNIPLGKIGEHVGDWEHFTLRFNNFTGELWKVYLSQHSAGKWVSASDLQYVAGSNRAVIYSSKDGHANFPAEGDFLQGNTELGIGIRNDAAKSKYFVDTSGKYQIVQQNIE*

Protein Length: 135

Fln nts: CATGCACTGATCTGGCAATGTGGGTATTTTGTCCATTCAATGGCCCAGGGACCCTCAAGGCTGAGGTGTTCAATATACCTCTTGGTAAAATAGGAGAGCATGTTGGGGATTGGGAGCATTTCACTCTTAGGTTCAACAACTTCACAGGTGAGTTATGGAAAGTTTATTTGTCTCAGCACAGTGCTGGCAAATGGGTCAGTGCCTCAGATCTGCAATACGTTGCAGGGAGCAATAGGGCAGTTATCTATTCTTCCAAGGATGGCCATGCAAATTTTCCTGCTGAAGGGGACTTCCTTCAAGGGAATACAGAGCTTGGAATTGGGATAAGGAATGATGCAGCCAAGAGCAAGTATTTTGTTGATACAAGCGGCAAATACCAGATTGTTCAGCAGAATATTGAGTAAGGATGCGTCCACAAGAGCCTCCATGGCTGCAATACATGAGGAAAT

Fln Alignment:

sp_v1.1_unigene40126___TDLAMWVFCPFNGPGTLKAEVFNIPLGKIGEHVGDWEHFTLRFNNFTGELWKVYLSQHSAGKWVSASDLQYVAGSNRAVIYSSKDGHANFPAEGDFLQGNTELGIGIRNDAAKSKYFVDTSGKYQIV
B9I5Q1_______________TDIAMWIFCPFNGPATLKIGLMTIPMTKIGQHVGDWEHYTLRVSNFTGELWQVFFSEHSGGRWVDASDLEFIEG-NRPVVYSSKHGHASFPHPGTYLQGSTKLGIGVRNDVARSKYYVDSSLKYQLV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
85		66		33	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain