SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene40069

Length: 350 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene40069
TACAGGCAGACTCTGATCATGACAAGGAAGGAGAAACAAGATGGCATAAAACTGGCAAAACCAGACCTGTCATGGTCAATGGAAAACACAAAGGCTGCAAGAAAATCCTAGTTCTGTACAGGAACTTTGGGAAGAACAAGAAACCTGAGAAAACAATTGGGTTATGCATCAATATCATTTGGGTTCACAAGAAGAAGAGAAGGAAGGGGAGCTCGTTGTCTCCAAGGTTTCTATCAGAGACAACCAAGACAATGTCATTTTGAAAAGGTTGCAGATATTGGGCATGGGAAGGCTGGTGCACAGAGTATCGACCGGAAGGAGCACAAGGGCTCAGAAACTTCTGAGTGCAT

Ace file of the UniGene sp_v1.1_unigene40069

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	No apical meristem-like protein (Fragment) n=1 Tax=Picea sitchensis RepID=E0ZFA1_PICSI	-	-	2.0e-30	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	no apical meristem-like protein	-	-	4.04534e-30	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription activator activity	GO:0016563	Molecular Function	4.04534e-30	90%
Blast2go	nucleus	GO:0005634	Cellular Component	4.04534e-30	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	No apical meristem (NAM) protein	IPR003441	-	4.04534e-30	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLI0

Fln msg: Overlapping hits, possible frame ERROR between 155 and 149, Distance to subject end: 150 aas, your sequence is shorter than subject: 116 - 395

Fln protein: QADSDHDKEGETRWHKTGKTRPVMVNGKHKGCKKILVLYRNFGKNKKPxxxxWVMHQYHLGSQEEEKEGELVVSKVSIRDNQDNVILKRLQILGMGRLVHRVSTGRSTRAQKLLSA

Protein Length: 117

Fln nts: TACAGGCAGACTCTGATCATGACAAGGAAGGAGAAACAAGATGGCATAAAACTGGCAAAACCAGACCTGTCATGGTCAATGGAAAACACAAAGGCTGCAAGAAAATCCTAGTTCTGTACAGGAACTTTGGGAAGAACAAGAAACCTxxxxxxxxxxxxTGGGTTATGCATCAATATCATTTGGGTTCACAAGAAGAAGAGAAGGAAGGGGAGCTCGTTGTCTCCAAGGTTTCTATCAGAGACAACCAAGACAATGTCATTTTGAAAAGGTTGCAGATATTGGGCATGGGAAGGCTGGTGCACAGAGTATCGACCGGAAGGAGCACAAGGGCTCAGAAACTTCTGAGTGCAT

Fln Alignment:

sp_v1.1_unigene40069___RWHKTGKTRPVMVNGKHKGCKKILVLYRNFGKNKKPExxNWVMHQYHLGSQEEEKEGELVVSKVSIR
B8LLI0_______________RWHKTGSTKKVYENGEQIGCKKIMGLEMTSAKGSKPExxNWVMHQYHLGTEDDEKEGEFVVSKIKYK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain