SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39965

Length: 470 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene39965
CGTCGTGACCTTGGCTGTCACTCATTTTCTGGACCTTTACCGGGTGCGCTTTTTATGGAAGATTCTTCGGTCTTGAGTGAACTGGATCTCAGCCACAACAATCTTTCGGGCAATGTAAACAATATTGCAACGACAACTCTTAAGGTGCTCAACCTTTCTTCAAATGCACTATCTGGTACATTGCCAATAAAATTTGGAATCTGTGCAGTAGTGGATTTGAGTGATAACAAGTTATCTGGGGATTTGTCTATGATGCGGACATGGGGAAATTATATGGAAGTTCTTGATCTGAGCCAGAATTCATTTACAGGGTCCCTGCCAAATGATACTTCTCAGTTTTTAAGATTGACCTATCTGAATTTATCCCACAATAACTTAGTGGGATCTCTCCCAACTGTATTGGGAATGTATCCCAAGATTAATGTTATTGACCTTAGCTTCAACAAGCTAAACGGGGCTCTTTTAACCAG

Ace file of the UniGene sp_v1.1_unigene39965

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	-	-	9.0e-33	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	atp binding protein	-	-	2.25132e-37	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	2.25132e-37	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Distance to subject end: 556 aas, your sequence is shorter than subject: 156 - 946

Fln protein: RRDLGCHSFSGPLPGALFMEDSSVLSELDLSHNNLSGNVNNIATTTLKVLNLSSNALSGTLPIKFGICAVVDLSDNKLSGDLSMMRTWGNYMEVLDLSQNSFTGSLPNDTSQFLRLTYLNLSHNNLVGSLPTVLGMYPKINVIDLSFNKLNGALLT

Protein Length: 157

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCTGGACCTTTACCGGGTGCGCTTTTTATGGAAGATTCTTCGGTCTTGAGTGAACTGGATCTCAGCCACAACAATCTTTCGGGCAATGTAAACAATATTGCAACGACAACTCTTAAGGTGCTCAACCTTTCTTCAAATGCACTATCTGGTACATTGCCAATAAAATTTGGAATCTGTGCAGTAGTGGATTTGAGTGATAACAAGTTATCTGGGGATTTGTCTATGATGCGGACATGGGGAAATTATATGGAAGTTCTTGATCTGAGCCAGAATTCATTTACAGGGTCCCTGCCAAATGATACTTCTCAGTTTTTAAGATTGACCTATCTGAATTTATCCCACAATAACTTAGTGGGATCTCTCCCAACTGTATTGGGAATGTATCCCAAGATTAATGTTATTGACCTTAGCTTCAACAAGCTAAACGGGGCTCTTTTAACCAG

Fln Alignment:

sp_v1.1_unigene39965___DLGCHSFSGPLPGALFMXXXXXXXXXXXXHNNLSGNVNNIA--TTTLKVLNLSSNALSGTLPIKFGIC---AVVDLSDNKLSGDLSMMRTWGNYMEV--LDLSQNSFTGSLPNDTSQFLRLTYLNLSHNNLVGSLPTVLGMYPKINVIDLSFNKLNGAL
C0PTA1_______________DLSNNSLSGHIPPTL--GNCISLSHLHLSENSLSGHIPPTLGNCTSLSHLDLSGNSLSGHIPPTLGKCISLSYIYLSGNSLSGH--MPRTLGNLTQISHINLSFNNLSGVIPVDLGSLQKLEWLGLSDNNLSGAIPVDLGSLQKLQILDLSDNALDNII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain