SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39957

Length: 528 nt

UniGene Fasta

>sp_v1.1_unigene39957
GGAGAGTGCCAGAGCTGCTGATGTTTATGCATTTGGCATCCTTCTATTGGAACTTATATCTGGAAGAGAAGCTTCAAGTCAAAGTGCTTTGGCACTTATTGATTTGGCAAAGCAATGTCTCCACTGCAATGATAAGATGCCAGATATAGCAGATCCAGCCTTGAAGAATGTTGTTGCAGGAGAGTTCAGTTCTATATGTGAAATTGCTTGCCGCTGTGTTCAGCAAGATGCAAAAGCCAGGCCAAACATGGAAGATGTTATTACATTACTTGTGCAAGCACTGGGTATTGGTTTTGAAACTGCTGCGCCTATAACAAATCCATTAACTTTAAGAGGCCTTGGGGAAATCTTCTAGTAATTCTAGGTGTTTTGTTTGGGCCCATGTGCTAAGGTAAATACCACTTACAAATATATTGAAGGCACATCTTCTAGTTCCAGATCTATTTYTTTTCAAAGAAATATAGTCCTTCACTCACCCCCATGTTAAACATTCTGAGTGAAGATGCTGGTGCCTTTCCAGTGTCCCAC

Ace file of the UniGene sp_v1.1_unigene39957

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat transmembrane protein kinase, putative	-	-	4.0e-11	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	serine threonine-specific protein kinase npk15-like	-	-	1.84675e-14	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMF2

Fln msg: your sequence is shorter than subject: 118 - 754

Fln protein: ESARAADVYAFGILLLELISGREASSQSALALIDLAKQCLHCNDKMPDIADPALKNVVAGEFSSICEIACRCVQQDAKARPNMEDVITLLVQALGIGFETAAPITNPLTLRGLGEIF*

Protein Length: 119

Fln nts: GGAGAGTGCCAGAGCTGCTGATGTTTATGCATTTGGCATCCTTCTATTGGAACTTATATCTGGAAGAGAAGCTTCAAGTCAAAGTGCTTTGGCACTTATTGATTTGGCAAAGCAATGTCTCCACTGCAATGATAAGATGCCAGATATAGCAGATCCAGCCTTGAAGAATGTTGTTGCAGGAGAGTTCAGTTCTATATGTGAAATTGCTTGCCGCTGTGTTCAGCAAGATGCAAAAGCCAGGCCAAACATGGAAGATGTTATTACATTACTTGTGCAAGCACTGGGTATTGGTTTTGAAACTGCTGCGCCTATAACAAATCCATTAACTTTAAGAGGCCTTGGGGAAATCTTCTAG___TAATTCTAGGTGTTTTGTTTGGGCCCATGTGCTAAGGTAAATACCACTTACAAATATATTGAAGGCACATCTTCTAGTTCCAGATCTATTTtTTTTCAAAGAAATATAGTCCTTCACTCACCCCCATGTTAAACATTCTGAGTGAAGATGCTGGTGCCTTTCCAGTGTCCCAC

Fln Alignment:

sp_v1.1_unigene39957___DVYAFGILLLELISGREASSQSALALIDLAKQCLHCNDKMPDIADPALKNVVAGEFSSICEIACRCVQQDAKARPNMEDVITLLVQALGIGFETAAPITNPL
B8LMF2_______________NVYCFGLLLLEIISGKLPYAQEQGLLIEWAMGYLDKKDMIQYMVDPSLKSFKYNELEKICEVVQSCILPYRQKRLSMRDITSELRQALSISPDAAYPKLSPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain