SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39929

Length: 307 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene39929
TGGATGTTACGGCCAATTTTTACAGAATAGAGTCCCAGCAGTTTATTGAATGTTGTGATTGTGGTGATTATATGAAGAAAGCAGAAAGAAGGCTAAATGAAGAGATGGACAGAGTTTCAAATTACTTAGATCCAAAGAGCGAGATAAAGATTACCTCTGTTGTTGAGAGGGAGATGATCGCTAACCACATGACGCGGCTGGTCCACATGGAGAACTCTGGATTGGTGAGAATGCTTGTGTGTGACAAGTATGAAGACTTGGGGCGCATGCATAGCTTGTTTCGTCGTGTTCCCATTGGGTTGCAAAC

Ace file of the UniGene sp_v1.1_unigene39929

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cullin, putative; K03869 cullin 3	-	-	1.0e-39	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	cullin 3	-	-	1.25811e-40	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	1.25811e-40	89%
Blast2go	endosperm development	GO:0009960	Biological Process	1.25811e-40	89%
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	1.25811e-40	89%
Blast2go	response to red or far red light	GO:0009639	Biological Process	1.25811e-40	89%
Blast2go	protein binding	GO:0005515	Molecular Function	1.25811e-40	89%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	1.25811e-40	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cullin, N-terminal	IPR001373	-	1.25811e-40	89%
Blast2go	Cullin repeat-like-containing domain	IPR016159	-	1.25811e-40	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNS8

Fln msg: Distance to subject end: 432 aas, your sequence is shorter than subject: 101 - 735

Fln protein: DVTANFYRIESQQFIECCDCGDYMKKAERRLNEEMDRVSNYLDPKSEIKITSVVEREMIANHMTRLVHMENSGLVRMLVCDKYEDLGRMHSLFRRVPIGLQ

Protein Length: 102

Fln nts: TGGATGTTACGGCCAATTTTTACAGAATAGAGTCCCAGCAGTTTATTGAATGTTGTGATTGTGGTGATTATATGAAGAAAGCAGAAAGAAGGCTAAATGAAGAGATGGACAGAGTTTCAAATTACTTAGATCCAAAGAGCGAGATAAAGATTACCTCTGTTGTTGAGAGGGAGATGATCGCTAACCACATGACGCGGCTGGTCCACATGGAGAACTCTGGATTGGTGAGAATGCTTGTGTGTGACAAGTATGAAGACTTGGGGCGCATGCATAGCTTGTTTCGTCGTGTTCCCATTGGGTTGCAAAC

Fln Alignment:

sp_v1.1_unigene39929___ANFYRIESQQFIECCDCGDYMKKAERRLNEEMDRVSNYLDPKSEIKITSVVEREMIANHMTRLVHMENSGLVRMLVCDKYEDLGRMHSLFRRVPIGL
B8LNS8_______________STFYSIESQQFIECCDCGDYLQKAERRLNEEIERVSHYLDSKSEVKITAVVEREMIANHMQRLVHMENSGLVSMLVDDKYDDLGRMYNLFRRVPAGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain