SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39915

Length: 385 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene39915
ATGGGGGTGGTAATGCAAATATTTTAGCAGGATTGAGTACATTGTCACAGCCTGTTAAACTGCGTTTTTGTAGAGCAGAAGGAGAAACATCTCTCCAGGATTATTCTTCAAATATGATACTCATTGATTCTTTGGCTAACTTGGCTGCTGTTGAAGAATTTCTTTGGCCTAGAATTCAAATAGGTGAGGCATCCCTAAAATCCTCAGCAAATTTAAGCTCTTCAGATGGCTGTGCAAGTGATTCTGGGGCAACTAATTCATTATCCCCATCGTCATCTGTGCCAGGAGATTCTGAAAGACTTCTTTCAACCAGACCCAAGACCTCAGCGGCAAGAGGAAGTTCTGCTGTGCAGGATTTAGATGGTTCAAATGCAAGCACTTCAAA

Ace file of the UniGene sp_v1.1_unigene39915

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hect ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SXV1_RICCO	-	-	4.0e-18	72%
FL-Next	sp=E3 ubiquitin-protein ligase UPL3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	65%
Blast2go	hect ubiquitin-protein ligase 3	-	-	6.74408e-18	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	6.74408e-18	79%
Blast2go	trichome branching	GO:0010091	Biological Process	6.74408e-18	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6WWW4

Fln msg: Distance to subject end: 854 aas, your sequence is shorter than subject: 127 - 1888

Fln protein: GGGNANILAGLSTLSQPVKLRFCRAEGETSLQDYSSNMILIDSLANLAAVEEFLWPRIQIGEASLKSSANLSSSDGCASDSGATNSLSPSSSVPGDSERLLSTRPKTSAARGSSAVQDLDGSNASTS

Protein Length: 128

Fln nts: ATGGGGGTGGTAATGCAAATATTTTAGCAGGATTGAGTACATTGTCACAGCCTGTTAAACTGCGTTTTTGTAGAGCAGAAGGAGAAACATCTCTCCAGGATTATTCTTCAAATATGATACTCATTGATTCTTTGGCTAACTTGGCTGCTGTTGAAGAATTTCTTTGGCCTAGAATTCAAATAGGTGAGGCATCCCTAAAATCCTCAGCAAATTTAAGCTCTTCAGATGGCTGTGCAAGTGATTCTGGGGCAACTAATTCATTATCCCCATCGTCATCTGTGCCAGGAGATTCTGAAAGACTTCTTTCAACCAGACCCAAGACCTCAGCGGCAAGAGGAAGTTCTGCTGTGCAGGATTTAGATGGTTCAAATGCAAGCACTTCAAA

Fln Alignment:

sp_v1.1_unigene39915___GNANILAGLSTLSQPVKLRFCRAEGETSLQDYSSNMILIDSLANLAAVEEFLWPRIQIGE
Q6WWW4_______________GSARLSSGLSALAHPLKLRLCRASGEKTLRDYSSNIVLIDPLASLAAVEEFLWPRVQRSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain