SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39888

Length: 307 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene39888
CAGAGTTGTATGGAGGAGCAAGGATTCATTATATATTTCAGTCTATTTTTGTTAAGTGCTTAGAGGAAGTTGATCCTTGTGATGATATCACTGATGAAGATATCCGAATGGCTATTCAAATGCTACTGGCCCAAAAATGCTTTGTTCGTTCCCGAGGTTCCTTTTGAAGTTCTAGTAAGAAGGCACATTTTTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCTCATCAATGTGAACAGTCGAGCTACAACGGTTCCTGCTTTATGTAGACGTCTT

Ace file of the UniGene sp_v1.1_unigene39888 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dynamin, putative n=1 Tax=Ricinus communis RepID=B9T3E4_RICCO	-	-	1.0e-30	84%
FL-Next	sp=Dynamin-related protein 3A; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	84%
Blast2go	dynamin like protein 2a	-	-	1.04929e-31	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Heterotrimeric G-protein GTPase.	EC:3.6.5.1	-	1.04929e-31	93%
Blast2go	Small monomeric GTPase.	EC:3.6.5.2	-	1.04929e-31	93%
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	1.04929e-31	93%
Blast2go	Signal-recognition-particle GTPase.	EC:3.6.5.4	-	1.04929e-31	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	peroxisome fission	GO:0016559	Biological Process	1.04929e-31	93%
Blast2go	post-embryonic development	GO:0009791	Biological Process	1.04929e-31	93%
Blast2go	mitochondrial fission	GO:0000266	Biological Process	1.04929e-31	93%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	1.04929e-31	93%
Blast2go	protein binding	GO:0005515	Molecular Function	1.04929e-31	93%
Blast2go	GTPase activity	GO:0003924	Molecular Function	1.04929e-31	93%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	1.04929e-31	93%
Blast2go	peroxisome	GO:0005777	Cellular Component	1.04929e-31	93%
Blast2go	membrane	GO:0016020	Cellular Component	1.04929e-31	93%
Blast2go	cytosol	GO:0005829	Cellular Component	1.04929e-31	93%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.04929e-31	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Dynamin central domain	IPR000375	-	1.04929e-31	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8S944

Fln msg: Separated hits, possible frame ERROR between 119 and 130, Unexpected STOP codon at 3' end. Distance to subject end: 317 aas, your sequence is shorter than subject: 100 - 808

Fln protein: ELYGGARIHYIFQSIFVKCLEEVDPCDDITDEDIRMAIxxxxxPKNALFVPEVPFEVLVRRHIFRLLDPSLQCARFIYDELVKIAHQCEQSSYNGSCFM*

Protein Length: 101

Fln nts: CAGAGTTGTATGGAGGAGCAAGGATTCATTATATATTTCAGTCTATTTTTGTTAAGTGCTTAGAGGAAGTTGATCCTTGTGATGATATCACTGATGAAGATATCCGAATGGCTATTCAxxxxxxxxxxxxGCCCAAAAATGCTTTGTTCGTTCCCGAGGTTCCTTTTGAAGTTCTAGTAAGAAGGCACATTTTTCGTTTATTAGATCCAAGCCTTCAATGTGCTCGTTTTATTTATGATGAGTTGGTAAAGATAGCTCATCAATGTGAACAGTCGAGCTACAACGGTTCCTGCTTTATGTAGACGTCTT

Fln Alignment:

sp_v1.1_unigene39888___ELYGGARIHYIFQSIFVKCLEEVDPCDDITDEDIRMAIQxxxxPKNALFVPEVPFEVLVRRHIFRLLDPSLQCARFIYDELVKIAHQC
Q8S944_______________ELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQxxxxPRSALFVPDVPFEVLVRRQISRLLDPSLQCARFIFEELIKISHRC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain