SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene39887

Length: 378 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene39887
TTGAAGCGAAAAAATAATGTGGGTCTAAGTGGTCAAATCTGTGAGGGGTCATGGCTGGGAATCAAGGTGGGTTTGAAGGAGATCATCGGTCGTGAATTTGTTCAGAAAGAAGCCATGGATTTAGCAAGGCTGCAGAGCCCATTTCTTGTGCAGGTTATTGGAGTAAGCCTGCATGGTGCTGATCGGTACTATCTTGTAACAGAGATGGTGAGCTCGAATCTGGTTAGACTACTGCAGGACTCTAGATCACGCTTGCATATTCCACTCCATGTTCGTATTGATATCATGTTGCAGATATCCAGAGGGATAGAGTATTTACACGGCCAGAGAAAATGCATCTCGATCTTAGACCTCTAAACGTGCTAATAGAGCCGAGTA

Ace file of the UniGene sp_v1.1_unigene39887

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S-locus protein kinase, putative	-	-	7.0e-07	30%
FL-Next	sp=G-type lectin S-receptor-like serine/threonine-protein kinase At1g61460; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	30%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	-
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Blast2go	Protein kinase-like domain	IPR011009	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O64774

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 163 aas, your sequence is shorter than subject: 119 - 749

Fln protein: LKRKNNVGLSGQICEGSWLGIKVGLKEIIGREFVQKEAMDLARLQSPFLVQVIGVSLHGADRYYLVTEMVSSNLVRLLQDSRSRLHIPLHVRIDIMLQISRGIEYLHGQRKCISILDL*

Protein Length: 120

Fln nts: TTGAAGCGAAAAAATAATGTGGGTCTAAGTGGTCAAATCTGTGAGGGGTCATGGCTGGGAATCAAGGTGGGTTTGAAGGAGATCATCGGTCGTGAATTTGTTCAGAAAGAAGCCATGGATTTAGCAAGGCTGCAGAGCCCATTTCTTGTGCAGGTTATTGGAGTAAGCCTGCATGGTGCTGATCGGTACTATCTTGTAACAGAGATGGTGAGCTCGAATCTGGTTAGACTACTGCAGGACTCTAGATCACGCTTGCATATTCCACTCCATGTTCGTATTGATATCATGTTGCAGATATCCAGAGGGATAGAGTATTTACACGGCCAGAGAAAATGCATCTCGATCTTAGACCTCTAAACGTGCTAATAGAGCCGAGTA

Fln Alignment:

sp_v1.1_unigene39887___NNVGLSGQICEGSWLGIKVGL----KEII----------GREFVQKEAMDLARLQSPFLVQVIGVSLHGADRYYLVTEMVSSNLVRLLQDSRSRLHIPLHVRIDIMLQISRGIEYLHGQRKCISIL
O64774_______________NNFSLSNKLGQGGFGSVYKGKLQDGKEIAVKRLSSSSGQGKEEFMNEIVLISKLQHKNLVRILGCCIEGEERLLIYEFMLNKSLDTFLFDSRKRLEIDWPKRFDIIQGIARGIHYLH-RDSCLKVI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
198	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain